BLAST example

BLAST is shorthand for a suite of tools developed at the NCBI and used in
bionformatics for sequence database searching.

The individual tools are as follows:

Command Description
blastn Search a nucleotide database with a nucleotide query
blastp Search a protein database with a protein query
blastx Search a protein database with a translated query
tblastn Search a translated nucleotide database with a protein query
tblastx Search a translated nucleotide database with a translated nucleotide query

To use BLAST on the Odyssey cluster, load the appropriate module

To access BLAST, you'll first need an account on Odyssey.

Accounts on Odyssey may be requested using the Account Request Tool: https://portal.rc.fas.harvard.edu/request/account/new

Then you'll need to login to the cluster.

Logging in to the odyssey cluster requires two factor authentication. You will first
be prompted for a password. This is your usual account password (as managed by Active Directory).
If your password is successful, you will be prompted for a verification code. This
must be the current value from the JAuth Java application.

Two factor login

Like other tools on the Odyssey cluster [load the appropriate module][odyssey/modules].
Currently, the best module is centos6/ncbi-blast-2.2.28

module load centos6/ncbi-blast-2.2.28

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