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Publications Acknowledging the FASRC Cluster

To acknowledge use of the Cannon cluster in your publications please use the following text as a guideline:
"The computations in this paper were run on the FASRC Cannon cluster supported by the FAS Division of Science Research Computing Group at Harvard University."
-or- 
"The computations in this paper were run on the FASRC FASSE cluster supported by the FAS Division of Science Research Computing Group at Harvard University."

We are always very interested in hearing about research conducted with the help of our computing resources. If you do not find your publication listed below, we encourage you to send us details so that we can include them.

2024 (64 publications)

  1. Steele, Sarah C and Fu, RR and Mittelholz, Anna and Ermakov, AI and Citron, RI and Lillis, RJ 2024. Weak magnetism of Martian impact basins may reflect cooling in a reversing dynamo Nature Communications Vol. 15, No. 1, pp. 6831, 2024.
  2. Saydjari, Andrew K and Finkbeiner, Douglas P and Wheeler, Adam J and Holtzman, Jon A and Wilson, John C and Casey, Andrew R and Sánchez-Maes, Sophia and Brownstein, Joel R and Hogg, David W and Blanton, Michael R 2024. Improving Radial Velocities by Marginalizing over Stars and Sky: Achieving 30 m/s RV Precision for APOGEE in the Plate Era arXiv preprint arXiv:2408.07126, 2024.
  3. Tu, Chien-Hua and Fastow, Eli J and John Chethalen, Roshni and Papamokos, George V and Coughlin, E Bryan and Winey, Karen I 2024. Coupling and Decoupling between Stickers and Backbones in Associating Polymers with Terminally Functionalized Side Chains Macromolecules, 2024.
  4. Wu, Skyler 2024. Extracting Signal out of Chaos: Advancements on MAGI for Bayesian Analysis of Dynamical Systems arXiv preprint arXiv:2409.01293, 2024.
  5. Grosso, Gaia and Letizia, Marco 2024. Multiple testing for signal-agnostic searches of new physics with machine learning arXiv preprint arXiv:2408.12296, 2024.
  6. Bystrom, Kyle and Falletta, Stefano and Kozinsky, Boris 2024. Training Machine-Learned Density Functionals on Band Gaps Journal of Chemical Theory and Computation, 2024.
  7. Tec, Mauricio and Josey, Kevin and Mudele, Oladimeji and Dominici, Francesca 2024. Causal Estimation of Exposure Shifts with Neural Networks and an Application to Inform Air Quality Standards in the US Proceedings of the 30th ACM SIGKDD Conference on Knowledge Discovery and Data Mining, pp. 2876--2887, 2024.
  8. Zhang, Gemma and Helfer, Thomas and Gagliano, Alexander T and Mishra-Sharma, Siddharth and Villar, V Ashley 2024. Maven: A Multimodal Foundation Model for Supernova Science arXiv preprint arXiv:2408.16829, 2024.
  9. Willett, Julian Daniel Sunday and Waqas, Mohammad and Choi, Younjung and Ngai, Tiffany and Mullin, Kristina and Tanzi, Rudolph E and Prokopenko, Dmitry 2024. Identification of 16 novel Alzheimer's disease susceptibility loci using multi-ancestry meta-analyses of clinical Alzheimer's disease and AD-by-proxy cases from four whole genome sequencing datasets medRxiv, pp. 2024--09, 2024.
  10. Vélez, Natalia and Wu, Charley M and Gershman, Samuel J and Schulz, Eric 2024. The rise and fall of technological development in virtual communities 2024.
  11. Sharipov, Felix and Schafer, Benjamin C and Keith, David W 2024. Modeling the photophoretic force on a perforated membrane Physics of Fluids Vol. 36, No. 8, 2024.
  12. Cheung, Clifford and Dersy, Aur{\'e}lien and Schwartz, Matthew D 2024. Learning the Simplicity of Scattering Amplitudes arXiv preprint arXiv:2408.04720, 2024.
  13. Fang, Bohao and Edwards, Scott V 2024. Fitness consequences of structural variation inferred from a House Finch pangenome bioRxiv, pp. 2024--05, 2024.
  14. Conroy, Charlie and Johnson, Benjamin D and van Dokkum, Pieter and Deason, Alis and Tacchella, Sandro and Belli, Sirio and Bowman, William P and Naidu, Rohan P and Park, Minjung and Abraham, Roberto and others 2024. Detection of Accretion Shelves Out to the Virial Radius of a Low-mass Galaxy with JWST The Astrophysical Journal Vol. 968, No. 2, pp. 129, 2024.
  15. Li, Chenguang and Kreiman, Gabriel and Ramanathan, Sharad 2024. Discovering neural policies to drive behaviour by integrating deep reinforcement learning agents with biological neural networks Nature Machine Intelligence, pp. 1--13, 2024.
  16. Cuesta-Lazaro, Carolina and Mishra-Sharma, Siddharth 2024. Point cloud approach to generative modeling for galaxy surveys at the field level Physical Review D Vol. 109, No. 12, pp. 123531, 2024.
  17. Pizzochero, Michele and Tepliakov, Nikita V and Lischner, Johannes and Mostofi, Arash A and Kaxiras, Efthimios 2024. One-dimensional magnetic conduction channels across zigzag graphene nanoribbon/hexagonal boron nitride heterojunctions Nano Letters, 2024.
  18. Mei, Zhendong and Wang, Fenglei and Bhosle, Amrisha and Dong, Danyue and Mehta, Raaj and Ghazi, Andrew and Zhang, Yancong and Liu, Yuxi and Rinott, Ehud and Ma, Siyuan and others 2024. Strain-specific gut microbial signatures in type 2 diabetes identified in a cross-cohort analysis of 8,117 metagenomes Nature Medicine, pp. 1--12, 2024.
  19. Zavatone-Veth, Jacob A and Pehlevan, Cengiz 2024. Nadaraya-Watson kernel smoothing as a random energy model arXiv preprint arXiv:2408.03769, 2024.
  20. Ma, Siyuan and Huttenhower, Curtis and Janson, Lucas 2024. Compositional Differential Abundance Testing: Defining and Finding a New Type of Health-Microbiome Associations bioRxiv, pp. 2024--06, 2024.
  21. Bordelon, Blake and Chaudhry, Hamza Tahir and Pehlevan, Cengiz 2024. Infinite Limits of Multi-head Transformer Dynamics arXiv preprint arXiv:2405.15712, 2024.
  22. Chaudhry, Hamza and Zavatone-Veth, Jacob and Krotov, Dmitry and Pehlevan, Cengiz 2024. Long sequence hopfield memory Advances in Neural Information Processing Systems Vol. 36, 2024.
  23. Chandra, Vedant and Naidu, Rohan P and Conroy, Charlie and Garavito-Camargo, Nicolas and Laporte, Chervin and Bonaca, Ana and Cargile, Phillip A and Cunningham, Emily and Han, Jiwon Jesse and Johnson, Benjamin D and others 2024. All-Sky Kinematics of the Distant Halo: The Reflex Response to the LMC arXiv preprint arXiv:2406.01676, 2024.
  24. Shen, Xuejian and Borrow, Josh and Vogelsberger, Mark and Garaldi, Enrico and Smith, Aaron and Kannan, Rahul and Tacchella, Sandro and Zavala, Jes{\'u}s and Hernquist, Lars and Yeh, Jessica YC and others 2024. THESAN-HR: galaxies in the Epoch of Reionization in warm dark matter, fuzzy dark matter, and interacting dark matter Monthly Notices of the Royal Astronomical Society Vol. 527, No. 2, pp. 2835--2857, 2024.
  25. Edenhofer, Gordian and Zucker, Catherine and Frank, Philipp and Saydjari, Andrew K and Speagle, Joshua S and Finkbeiner, Douglas and En{\ss}lin, Torsten A 2024. A parsec-scale Galactic 3D dust map out to 1.25 kpc from the Sun Astronomy \& Astrophysics Vol. 685, pp. A82, 2024.
  26. Yan, Xingchi and Yu, Polly Y and Srinivasan, Arvind and Abdul Rehman, Sohaib and Prigozhin, Maxim B 2024. Identifying Intermolecular Interactions in Single-Molecule Localization Microscopy bioRxiv, pp. 2024--05, 2024.
  27. Zhang, Gemma and {\c{S}}eng{\"u}l, At{\i}n{\c{c}} {\c{C}}a{\u{g}}an and Dvorkin, Cora 2024. Subhalo effective density slope measurements from HST strong lensing data with neural likelihood-ratio estimation Monthly Notices of the Royal Astronomical Society Vol. 527, No. 2, pp. 4183--4192, 2024.
  28. Rivoire, Louis and Linz, Marianna and Li, Jingyuan 2024. Observational limitations to the emergence of climate signals Geophysical Research Letters Vol. 51, No. 14, pp. e2024GL109638, 2024.
  29. Semenov, Vadim A and Conroy, Charlie and Chandra, Vedant and Hernquist, Lars and Nelson, Dylan 2024. Formation of Galactic Disks. I. Why Did the Milky Way’s Disk Form Unusually Early? The Astrophysical Journal Vol. 962, No. 1, pp. 84, 2024.
  30. Mirchandani, Cade D and Shultz, Allison J and Thomas, Gregg WC and Smith, Sara J and Baylis, Mara and Arnold, Brian and Corbett-Detig, Russ and Enbody, Erik and Sackton, Timothy B 2024. A fast, reproducible, high-throughput variant calling workflow for population genomics Molecular Biology and Evolution Vol. 41, No. 1, pp. msad270, 2024.
  31. Choma, Ernani F and Robinson, Lisa A and Nadeau, Kari C 2024. Adopting electric school buses in the United States: Health and climate benefits Proceedings of the National Academy of Sciences Vol. 121, No. 22, pp. e2320338121, 2024.
  32. Ruggeri, Fabrizio and Porter, Michael D and White, Gentry 2024. Endogenous and exogenous effects in self-exciting process models of terrorist activity Statistica Neerlandica, 2024.
  33. Noel, Asher J 2024. INFERNO: Accelerating Inference with Model Compression via Layer-Wise and Task-Specific Pruning 2024.
  34. Sun, Hongwei and Bourguet, Stephen and Luan, Lan and Keith, David 2024. Stratospheric transport and tropospheric sink of solar geoengineering aerosol: a Lagrangian analysis npj Climate and Atmospheric Science Vol. 7, No. 1, pp. 115, 2024.
  35. Sabti, Nashwan and Muñoz, Julian B and Blas, Diego 2024. GALLUMI: A Galaxy Luminosity Function Pipeline for Cosmology and Astrophysics arXiv eprints, 2024.
  36. Chen, Zhuo and McCarran, Jacob and Vizcaino, Esteban and Soljačić, Marin and Luo, Di 2024. TENG: Time-Evolving Natural Gradient for Solving PDEs with Deep Neural Net arXiv preprint arXiv:2404.10771, 2024.
  37. Sonnert, Nicole D and Rosen, Connor E and Ghazi, Andrew R and Franzosa, Eric A and Duncan-Lowey, Brianna and González-Hernández, Jaime A and Huck, John D and Yang, Yi and Dai, Yile and Rice, Tyler A and others 2024. A host--microbiota interactome reveals extensive transkingdom connectivity Nature Vol. 628, No. 8006, pp. 171--179, 2024.
  38. Tsang, Arthur and Çağan Şengül, Atınç and Dvorkin, Cora 2024. Substructure Detection in Realistic Strong Lensing Systems with Machine Learning arXiv preprint arXiv:2401.16624, 2024.
  39. Brandão, Lilliana and Reece, Christian 2024. Non-Steady State Validation of Kinetic Models for Ethylene Epoxidation over Silver Catalysts 2024.
  40. Lee, Sanghun and Hecker, Julian and Hahn, Georg and Mullin, Kristina and Alzheimer's Disease Neuroimaging Initiative (ADNI) and Lutz, Sharon M and Tanzi, Rudolph E and Lange, Christoph and Prokopenko, Dmitry 2024. On the effect heterogeneity of established disease susceptibility loci for Alzheimer's disease across different genetic ancestries Alzheimer's & Dementia, 2024.
  41. Hahn, Georg and Prokopenko, Dmitry and Hecker, Julian and Lutz, Sharon and Mullin, Kristina and Tanzi, Rudolph E and DeSantis, Stacia and Lange, Christoph 2024. Polygenic hazard score models for the prediction of Alzheimer's free survival using the lasso for Cox's proportional hazards model bioRxiv, pp. 2024--04, 2024.
  42. Pandya, Sneh and Yang, Yuanyuan and Van Alfen, Nicholas and Blazek, Jonathan and Walters, Robin 2024. Learning Galaxy Intrinsic Alignment Correlations arXiv preprint arXiv:2404.13702, 2024.
  43. Shin, Heejun and Linero, Antonio and Audirac, Michelle and Irene, Kezia and Braun, Danielle and Antonelli, Joseph 2024. Treatment Effect Heterogeneity and Importance Measures for Multivariate Continuous Treatments arXiv preprint arXiv:2404.09126, 2024.
  44. Ankile, Lars and Simeonov, Anthony and Shenfeld, Idan and Agrawal, Pulkit 2024. JUICER: Data-Efficient Imitation Learning for Robotic Assembly arXiv preprint arXiv:2404.03729, 2024.
  45. Chael, Andrew 2024. Hybrid GRMHD and Force-Free Simulations of Black Hole Accretion arXiv preprint arXiv:2404.01471, 2024.
  46. Trusov, Svyatoslav and Zarrouk, Pauline and Cole, Shaun 2024. Neural Network-based model of galaxy power spectrum: Fast full-shape galaxy power spectrum analysis arXiv preprint arXiv:2403.20093, 2024.
  47. Bystrom, Kyle and Falletta, Stefano and Kozinsky, Boris 2024. Addressing the Band Gap Problem with a Machine-Learned Exchange Functional arXiv preprint arXiv:2403.17002, 2024.
  48. Falletta, Stefano and Cepellotti, Andrea and Tan, Chuin Wei and Johansson, Anders and Musaelian, Albert and Owen, Cameron J and Kozinsky, Boris 2024. Unified Differentiable Learning of the Electric Enthalpy and Dielectric Properties with Exact Physical Constraints arXiv preprint arXiv:2403.17207, 2024.
  49. Mishra-Sharma, Siddharth and Song, Yiding and Thaler, Jesse 2024. PAPERCLIP: Associating Astronomical Observations and Natural Language with Multi-Modal Models arXiv preprint arXiv:2403.08851, 2024.
  50. Bhosle, Amrisha and Bae, Sena and Zhang, Yancong and Chun, Eunyoung and Avila-Pacheco, Julian and Geistlinger, Ludwig and Pishchany, Gleb and Glickman, Jonathan N and Michaud, Monia and Waldron, Levi and others 2024. Integrated annotation prioritizes metabolites with bioactivity in inflammatory bowel disease Molecular Systems Biology Vol. 20, No. 4, pp. 338--361, 2024.
  51. Kang, Ruizhe and Ge, Jian-Feng and He, Yang and Zhu, Zhihuai and Larson, Daniel T and Saghir, Mohammed and Hoffman, Jason D and Balakrishnan, Geetha and Hoffman, Jennifer E 2024. Nanoscale variation of the Rashba energy in BiTeI arXiv preprint arXiv:2402.18779, 2024.
  52. Thomas, Gregg WC and McKibben, Michael TW and Hahn, Matthew W and Barker, Michael S 2024. A comprehensive examination of Chelicerate genomes reveals no evidence for a whole genome duplication among spiders and scorpions bioRxiv, pp. 2024--02, 2024.
  53. Lock, Simon J and Stewart, Sarah T 2024. Atmospheric Loss in Giant Impacts Depends on Preimpact Surface Conditions The Planetary Science Journal Vol. 5, No. 2, pp. 28, 2024.
  54. Dupic, Thomas and Phillips, Angela M and Desai, Michael M 2024. Protein sequence landscapes are not so simple: on reference-free versus reference-based inference bioRxiv, pp. 2024--01, 2024.
  55. Jiao, Quan and Chen, Yongchao and Kim, Jong-hyoung and Han, Chang-Fu and Chang, Chia-Hua and Vlassak, Joost J 2024. A machine learning perspective on the inverse indentation problem: uniqueness, surrogate modeling, and learning elasto-plastic properties from pile-up Journal of the Mechanics and Physics of Solids Vol. 185, pp. 105557, 2024.
  56. Gemmell, Patrick 2024. Linking phenotypic and genotypic variation: a relaxed phylogenetic approach using the probabilistic programming language Stan bioRxiv, pp. 2024--01, 2024.
  57. Ye, Linda and Fang, Shiang and Kang, Mingu and Kaufmann, Josef and Lee, Yonghun and John, Caolan and Neves, Paul M and Zhao, SY Frank and Denlinger, Jonathan and Jozwiak, Chris and others 2024. Hopping frustration-induced flat band and strange metallicity in a kagome metal Nature Physics, pp. 1--5, 2024.
  58. Martins, Augusto and Contreras, Taylor and Stanford, Chris and Tuzi, Mirald and Albo, Justo M and Escobar, Carlos O and Para, Adam and Kish, Alexander and Park, Joon-Suh and Krauss, Thomas F and others 2024. High efficiency glass-based VUV metasurfaces arXiv preprint arXiv:2401.11315, 2024.
  59. Owen, Cameron J and Naghdi, Amirhossein D and Johansson, Anders and Massa, Dario and Papanikolaou, Stefanos and Kozinsky, Boris 2024. Unbiased Atomistic Predictions of Crystal Dislocation Dynamics using Bayesian Force Fields arXiv preprint arXiv:2401.04359, 2024.
  60. Chaves, Anderson and Larson, Daniel and Kaxiras, Efthimios 2024. Electron-Phonon coupling in moir{\'e} superlattices from first-principles calculations Bulletin of the American Physical Society, 2024.
  61. Lu, Jonathan Z and Jiao, Lucy and Wolinski, Kristina and Kornja{\v{c}}a, Milan and Hu, Hong-Ye and Cantu, Sergio and Liu, Fangli and Yelin, Susanne F and Wang, Sheng-Tao 2024. Digital-analog quantum learning on Rydberg atom arrays arXiv preprint arXiv:2401.02940, 2024.
  62. Gozashti, Landen and Hoekstra, Hopi E 2024. Accounting for diverse transposable element landscapes is key to developing and evaluating accurate de novo annotation strategies Genome Biology Vol. 25, No. 1, pp. 4, 2024.
  63. Geyman, B.M., Streets, D.G., Thackray, C.P., Olson, C.L., Schaefer, K., & Sunderland, E.M 2024. Projecting global mercury emissions and deposition under the Shared Socioeconomic Pathways. Earth's Future, 12, e2023EF004231. https://doi.org/10.1029/2023EF004231
  64. Joon-Suh Park, Soon Wei Daniel Lim, Arman Amirzhan, Hyukmo Kang, Karlene Karrfalt, Daewook Kim, Joel Leger, Augustine Urbas, Marcus Ossiander, Zhaoyi Li, and Federico Capasso 2024. All-Glass 100 mm Diameter Visible Metalens for Imaging the Cosmos Joon-Suh Park, Soon Wei Daniel Lim, Arman Amirzhan, Hyukmo Kang, Karlene Karrfalt, Daewook Kim, Joel Leger, Augustine Urbas, Marcus Ossiander, Zhaoyi Li, and Federico Capasso, "All-Glass 100 mm Diameter Visible Metalens for Imaging the Cosmos", ACS Nano 2024 18 (4), 3187-3198

2023 (76 publications)

  1. Rui Jie Tang, Soon Wei Daniel Lim, Marcus Ossiander, Xinghui Yin, Federico Capasso 2023. Time Reversal Differentiation of FDTD for Photonic Inverse Design Tang, R. J., Lim, S. W. D., Ossiander, M., Yin, X., & Capasso, F. (2023). Time Reversal Differentiation of FDTD for Photonic Inverse Design. ACS Photonics. https://doi.org/10.1021/acsphotonics.3c00694
  2. Sin, Simon Yung Wa and Ke, Fushi and Chen, Guoling and Huang, Pei-Yu and Enbody, Erik and Karubian, Jordan and Webster, Michael and Edwards, Scott V 2023. Genetic basis and evolution of structural color polymorphism in an Australian songbird bioRxiv, pp. 2023--09, 2023.
  3. Cheng, Yu and Hu, Zeyuan and McColl, Kaighin A 2023. Anomalously darker land surfaces become wetter due to mesoscale circulations Geophysical Research Letters Vol. 50, No. 17, pp. e2023GL104137, 2023.
  4. Eastman, Jason D 2023. A novel eccentricity parameterization for transit-only models arXiv preprint arXiv:2309.14410, 2023.
  5. Cuesta-Lazaro, Carolina and Paillas, Enrique and Yuan, Sihan and Cai, Yan-Chuan and Nadathur, Seshadri and Percival, Will J and Beutler, Florian and de Mattia, Arnaud and Eisenstein, Daniel and Forero-Sanchez, Daniel and others 2023. SUNBIRD: A simulation-based model for full-shape density-split clustering arXiv preprint arXiv:2309.16539, 2023.
  6. Gemmell, Patrick and Sackton, Timothy B and Edwards, Scott V and Liu, Jun S 2023. A phylogenetic method linking nucleotide substitution rates to rates of continuous trait evolution bioRxiv, pp. 2023--10, 2023.
  7. Chandra, Vedant and Naidu, Rohan P and Conroy, Charlie and Bonaca, Ana and Zaritsky, Dennis and Cargile, Phillip A and Caldwell, Nelson and Johnson, Benjamin D and Han, Jiwon Jesse and Ting, Yuan-Sen 2023. Discovery of the Magellanic Stellar Stream Out to 100 kpc The Astrophysical Journal Vol. 956, No. 2, pp. 110, 2023.
  8. Chandra, Vedant and Semenov, Vadim A and Rix, Hans-Walter and Conroy, Charlie and Bonaca, Ana and Naidu, Rohan P and Andrae, Rene and Li, Jiadong and Hernquist, Lars 2023. The Three-Phase Evolution of the Milky Way arXiv preprint arXiv:2310.13050, 2023.
  9. Fu, Xiang and Musaelian, Albert and Johansson, Anders and Jaakkola, Tommi and Kozinsky, Boris 2023. Learning Interatomic Potentials at Multiple Scales arXiv preprint arXiv:2310.13756, 2023.
  10. Gozashti, Landen and Corbett-Detig, Russ 2023. Universal signatures of transposable element compartmentalization across eukaryotic genes bioRxiv, pp. 2023--10, 2023.
  11. Martins, Augusto and da Mota, Achiles F and Stanford, Chris and Contreras, Taylor and Martin-Albo, Justo and Kish, Alexander and Escobar, Carlos and Para, Adam and Guenette, Roxanne 2023. Simple strategy for simulation of large area of axially symmetric metasurfaces arXiv preprint arXiv:2310.19121, 2023.
  12. Yuchen Chai, Devika Kakkar, Juan Palacios & Siqi Zheng 2023. Twitter Sentiment Geographical Index Dataset Dataset. Sci Data 10, 684 (2023). https://doi.org/10.1038/s41597-023-02572-7
  13. Yan, Han and Hui, Zhirui and Thomas, Gregg WC and Edwards, Scott V and Sackton, Timothy B and Liu, Jun S 2023. PhyloAcc-GT: A Bayesian method for inferring patterns of substitution rate shifts on targeted lineages accounting for gene tree discordance Molecular Biology and Evolution, pp. msad195, 2023.
  14. Jorfi, Mehdi and Park, Joseph and Hall, Clare K and Lin, Chih-Chung Jerry and Chen, Meng and von Maydell, Djuna and Kruskop, Jane M and Kang, Byunghoon and Choi, Younjung and Prokopenko, Dmitry and others 2023. Infiltrating CD8+ T cells exacerbate Alzheimer’s disease pathology in a 3D human neuroimmune axis model Nature Neuroscience, pp. 1--16, 2023.
  15. Cheng, Yu and McColl, Kaighin A 2023. Thermally direct mesoscale circulations caused by land surface roughness anomalies Geophysical Research Letters Vol. 50, No. 16, pp. e2023GL105150, 2023.
  16. Yang, Zhiyuan and Ryu, Dongryeol and Lo, Min-Hui and Peel, Murray C and Narsey, Sugata Y and McColl, Kaighin A 2023. Negligible impact on precipitation from a permanent inland lake in central Australia Geophysical Research Letters Vol. 50, No. 16, pp. e2023GL103913, 2023.
  17. Akhmetzhanova, Aizhan and Mishra-Sharma, Siddharth and Dvorkin, Cora 2023. Data Compression and Inference in Cosmology with Self-Supervised Machine Learning arXiv preprint arXiv:2308.09751, 2023.
  18. Hsu, Tiffany Y and Nzabarushimana, Etienne and Wong, Dennis and Luo, Chengwei and Beiko, Robert G and Langille, Morgan and Huttenhower, Curtis and Nguyen, Long H and Franzosa, Eric A 2023. Profiling novel lateral gene transfer events in the human microbiome bioRxiv, pp. 2023--08, 2023.
  19. Patsalidis, Nikolaos and Papamokos, George and Floudas, George and Harmandaris, Vagelis 2023. Structure and Dynamics of a Polybutadiene Melt Confined between Alumina Substrates Macromolecules, 2023.
  20. Melissa, Matthew J and Desai, Michael M 2023. A dynamical limit to evolutionary adaptation bioRxiv, pp. 2023--07, 2023.
  21. Lee, Jenny J and Wu, Xiao and Dominici, Francesca and Nethery, Rachel C 2023. Causal exposure-response curve estimation with surrogate confounders: a study of air pollution and children's health in Medicaid claims data arXiv preprint arXiv:2308.00812, 2023.
  22. Thompson, Kelsey N and Bonham, Kevin S and Ilott, Nicholas E and Britton, Graham J and Colmenero, Paula and Bullers, Samuel J and McIver, Lauren J and Ma, Siyuan and Nguyen, Long H and Filer, Andrew and others 2023. Alterations in the gut microbiome implicate key taxa and metabolic pathways across inflammatory arthritis phenotypes Science translational medicine Vol. 15, No. 706, pp. eabn4722, 2023.
  23. Tian, Yu and Lubberts, Zachary and Weber, Melanie 2023. Curvature-based Clustering on Graphs arXiv preprint arXiv:2307.10155, 2023.
  24. Vega, Sofia L and Nethery, Rachel C 2023. Spatio-temporal quasi-experimental methods for rare disease outcomes: The impact of reformulated gasoline on childhood hematologic cancer arXiv preprint arXiv:2307.09546, 2023.
  25. Park, Joon-Suh and Lim, Soon Wei Daniel and Amirzhan, Arman and Kang, Hyukmo and Karrfalt, Karlene and Kim, Daewook and Leger, Joel and Urbas, Augustine M and Ossiander, Marcus and Li, Zhaoyi and others 2023. All-glass 100 mm Diameter Visible Metalens for Imaging the Cosmos arXiv preprint arXiv:2307.08186, 2023.
  26. Pizzardo, Michele and Geller, Margaret J and Kenyon, Scott J and Damjanov, Ivana and Diaferio, Antonaldo 2023. Galaxy cluster mass accretion rates from IllustrisTNG arXiv preprint arXiv:2307.07398, 2023.
  27. Huynh, Stella and Cloutier, Alison and Chen, Guoling and Chan, David Tsz Chung and Lam, Derek Kong and Huyvaert, Kathryn P and Sato, Fumio and Edwards, Scott V and Sin, Simon Yung Wa 2023. Whole-genome analyses reveal past population fluctuations and low genetic diversities of the North Pacific albatrosses Molecular Biology and Evolution Vol. 40, No. 7, pp. msad155, 2023.
  28. Rego-Costa, Artur 2023. On Pleiotropy and Evolutionary Dynamics in the Budding Yeast Saccharomyces cerevisiae 2023.
  29. Chang, Chi-Ming and Feng, Li and Lin, Ying-Hsuan and Tao, Yi-Xiao 2023. Decoding stringy near-supersymmetric black holes arXiv preprint arXiv:2306.04673, 2023.
  30. Papamokos, George V and Kaxiras, Efthimios 2023. How to evict HP1 from H3: Using a complex salt bridge Biophysical Chemistry, pp. 107062, 2023.
  31. Chaudhry, Hamza Tahir and Zavatone-Veth, Jacob A and Krotov, Dmitry and Pehlevan, Cengiz 2023. Long Sequence Hopfield Memory arXiv preprint arXiv:2306.04532, 2023.
  32. Oh, Jaewon and Yang, Jun and Marra, Louis and Dorrah, Ahmed H and Palmieri, Alfonso and Dainese, Paulo and Capasso, Federico 2023. Metasurfaces for free-space coupling to multicore fibers arXiv preprint arXiv:2306.07896, 2023.
  33. Eastham, Sebastian D and Chossi{\`e}re, Guillaume P and Speth, Raymond L and Jacob, Daniel J and Barrett, Steven RH 2023. Global impacts of aviation on air quality evaluated at high resolution EGUsphere Vol. 2023, pp. 1--18, 2023.
  34. Mirchandani, Cade D and Shultz, Allison J and Thomas, Gregg WC and Smith, Sara J and Baylis, Mara and Arnold, Brian and Corbett-Detig, Russ and Enbody, Erik and Sackton, Timothy B 2023. A fast, reproducible, high-throughput variant calling workflow for evolutionary, ecological, and conservation genomics bioRxiv, pp. 2023--06, 2023.
  35. Chandra, Vedant and Naidu, Rohan P and Conroy, Charlie and Bonaca, Ana and Zaritsky, Dennis and Cargile, Phillip A and Caldwell, Nelson and Johnson, Benjamin D and Han, Jiwon Jesse and Ting, Yuan-Sen 2023. Discovery of the Magellanic Stellar Stream Out to 100 Kiloparsecs arXiv preprint arXiv:2306.15719, 2023.
  36. Nessralla, Jonathon and Larson, Daniel T and Taniguchi, Takashi and Watanabe, Kenji and Kaxiras, Efthimios and Bediako, D Kwabena 2023. Modulating the electrochemical intercalation of graphene interfaces with α-RuCl3 as a solid-state electron acceptor arXiv preprint arXiv:2308.06437, 2023.
  37. Qiu, Richard and Krastev, Plamen G and Gill, Kiranjyot and Berger, Edo 2023. Deep learning detection and classification of gravitational waves from neutron star-black hole mergers Physics Letters B Vol. 840, pp. 137850, 2023.
  38. Zhu, Albert and Batzner, Simon and Musaelian, Albert and Kozinsky, Boris 2023. Fast uncertainty estimates in deep learning interatomic potentials The Journal of Chemical Physics Vol. 158, No. 16, 2023.
  39. Mork, Daniel and Braun, Danielle and Zanobetti, Antonella 2023. Time-lagged relationships between a decade of air pollution exposure and first hospitalization with Alzheimer's disease and related dementias Environment International Vol. 171, pp. 107694, 2023.
  40. Lee, Sanghun and Hahn, Georg and Hecker, Julian and Lutz, Sharon M and Mullin, Kristina and Alzheimer’s Disease Neuroimaging Initiative (ADNI) and Hide, Winston and Bertram, Lars and DeMeo, Dawn L and Tanzi, Rudolph E and others 2023. A comparison between similarity matrices for principal component analysis to assess population stratification in sequenced genetic data sets Briefings in Bioinformatics Vol. 24, No. 1, pp. bbac611, 2023.
  41. Podolak, Morris and Levi, Amit and Vazan, Allona and Malamud, Uri 2023. An equation of state of CO for use in planetary modeling Icarus, pp. 115424, 2023.
  42. Teng, Yanting and Sachdev, Subir and Scheurer, Mathias S 2023. Classifying topological neural network quantum states via diffusion maps arXiv preprint arXiv:2301.02683, 2023.
  43. Zavatone-Veth, Jacob A and Yang, Sheng and Rubinfien, Julian A and Pehlevan, Cengiz 2023. Neural networks learn to magnify areas near decision boundaries arXiv preprint arXiv:2301.11375, 2023.
  44. Card, Daren C and Jennings, W Bryan and Edwards, Scott V 2023. Genome evolution and the future of phylogenomics of non-avian reptiles Animals Vol. 13, No. 3, pp. 471, 2023.
  45. Freedman, Adam H and Harrigan, Ryan J and Zhen, Ying and Hamilton, Alison M and Smith, Thomas B 2023. Evidence for ecotone speciation across an African rainforest-savanna gradient Molecular Ecology, 2023.
  46. Chaves, Anderson S and Pizzochero, Michele and Larson, Daniel T and Antonelli, Alex and Kaxiras, Efthimios 2023. Semiclassical Electron and Phonon Transport from First Principles: Application to Layered Thermoelectrics arXiv preprint arXiv:2302.00202, 2023.
  47. Tec, Mauricio and Mudele, Oladimeji and Josey, Kevin and Dominici, Francesca 2023. Causal Shift-Response Functions with Neural Networks: The Health Benefits of Lowering Air Quality Standards in the US arXiv preprint arXiv:2302.02560, 2023.
  48. Chaudhary, Gaurav and Christ, Stephanie and Hart, A John and Mahadevan, L 2023. Learning to write with the fluid rope trick arXiv preprint arXiv:2302.05853, 2023.
  49. Mehta, Raaj S and Mayers, Jared R and Zhang, Yancong and Bhosle, Amrisha and Glasser, Nathaniel R and Nguyen, Long H and Ma, Wenjie and Bae, Sena and Branck, Tobyn and Song, Kijun and others 2023. Gut microbial metabolism of 5-ASA diminishes its clinical efficacy in inflammatory bowel disease Nature Medicine Vol. 29, No. 3, pp. 700--709, 2023.
  50. Owen, Cameron J and Torrisi, Steven B and Xie, Yu and Batzner, Simon and Coulter, Jennifer and Musaelian, Albert and Sun, Lixin and Kozinsky, Boris 2023. Complexity of Many-Body Interactions in Transition Metals via Machine-Learned Force Fields from the TM23 Data Set arXiv preprint arXiv:2302.12993, 2023.
  51. Levi, A and Bansal, A and Sasselov, D 2023. A High-pressure Filled Ice in the H2O--CO2--CH4 System, with Possible Consequences for the CO2--CH4 Biosignature Pair The Astrophysical Journal Vol. 944, No. 2, pp. 209, 2023.
  52. Bae, Eunchan and Dias, Julie-Alexia and Huang, Theodore and Chen, Jinbo and Parmigiani, Giovanni and Rebbeck, Timothy R and Braun, Danielle 2023. Variant-specific Mendelian Risk Prediction Model bioRxiv, pp. 2023--03, 2023.
  53. Khalil, Sarah and Enbody, Erik D and Frankl-Vilches, Carolina and Welklin, Joseph F and Koch, Rebecca E and Toomey, Matthew B and Sin, Simon Yung Wa and Edwards, Scott V and Gahr, Manfred and Schwabl, Hubert and others 2023. Testosterone coordinates gene expression across different tissues to produce carotenoid-based red ornamentation Molecular Biology and Evolution Vol. 40, No. 4, pp. msad056, 2023.
  54. Nevin, Rebecca and Blecha, L and Comerford, J and Simon, J and Terrazas, BA and Barrows, RS and V{\'a}zquez-Mata, JA 2023. A declining major merger fraction with redshift in the local Universe from the largest-yet catalogue of major and minor mergers in SDSS Monthly Notices of the Royal Astronomical Society Vol. 522, No. 1, pp. 1--28, 2023.
  55. Sommer, Alice Josephine 2023. Randomization-based causal inference for Environmental Epidemiology 2023.
  56. Bornet, Guillaume and Emperauger, Gabriel and Chen, Cheng and Ye, Bingtian and Block, Maxwell and Bintz, Marcus and Boyd, Jamie A and Barredo, Daniel and Comparin, Tommaso and Mezzacapo, Fabio and others 2023. Scalable spin squeezing in a dipolar Rydberg atom array arXiv preprint arXiv:2303.08053, 2023.
  57. Chantada, Augusto T and Landau, Susana J and Protopapas, Pavlos and Sc{\'o}ccola, Claudia G and Garraffo, Cecilia 2023. Cosmology-informed neural networks to solve the background dynamics of the Universe Physical Review D Vol. 107, No. 6, pp. 063523, 2023.
  58. Childers, Richard A Rabideau and Bernard, Gary D and Huang, Heqing and Tsai, Cheng-Chia and Stoddard, Mary Caswell and Hogan, Benedict G and Greenwood, Joel SF and Soucy, Edward R and Cornwall, Mark and Lim, Matthew Lek Min and others 2023. A hypothesis for robust polarization vision: an example from the Australian imperial blue butterfly, Jalmenus evagoras Journal of Experimental Biology Vol. 226, No. 7, pp. jeb244515, 2023.
  59. Krastev, Plamen G 2023. A Deep Learning Approach to Extracting Nuclear Matter Properties from Neutron Star Observations Symmetry Vol. 15, No. 5, pp. 1123, 2023.
  60. Pizzardo, Michele and Geller, Margaret J and Kenyon, Scott J and Damjanov, Ivana and Diaferio, Antonaldo 2023. An IllustrisTNG View of the Caustic Technique for Galaxy Cluster Mass Estimation arXiv preprint arXiv:2303.18147, 2023.
  61. Hwang, Yunha and Cornman, Andre L and Kellogg, Elizabeth H and Ovchinnikov, Sergey and Girguis, Peter R 2023. Genomic language model predicts protein co-regulation and function bioRxiv, pp. 2023--04, 2023.
  62. Musaelian, Albert and Johansson, Anders and Batzner, Simon and Kozinsky, Boris 2023. Scaling the leading accuracy of deep equivariant models to biomolecular simulations of realistic size arXiv preprint arXiv:2304.10061, 2023.
  63. Childers, Richard Rabideau and Cai, Liming and Chowdhury, Shawan and Crall, James and Cornwall, Mark and Sipe, Rachel Hawkins and Maier, Crystal and Maunsell, Sarah and Talavera, Gerard and Tsai, Cheng-Chia and others 2023. Selection on size has generated distinctive paired wing flight systems for butterfly flight and migration 2023.
  64. Owen, Cameron J and Marcella, Nicholas and Xie, Yu and Vandermause, Jonathan and Frenkel, Anatoly I and Nuzzo, Ralph G and Kozinsky, Boris 2023. Unraveling the Catalytic Effect of Hydrogen Adsorption on Pt Nanoparticle Shape-Change arXiv preprint arXiv:2306.00901, 2023.
  65. Ashby, Matthew LN and Hora, Joseph L and Lakshmipathaiah, Kiran and Vig, Sarita and Gorthi, Rama Krishna Sai Subrahmanyam and Kang, Miju and Tolls, Volker and Melnick, Gary J and Werner, Michael W and Crill, Brendan P and others 2023. The SPHEREx Target List of Ice Sources (SPLICES) The Astrophysical Journal Vol. 949, No. 2, pp. 105, 2023.
  66. Tepliakov, Nikita V and Ma, Ruize and Lischner, Johannes and Kaxiras, Efthimios and Mostofi, Arash A and Pizzochero, Michele 2023. Dirac half-semimetallicity and antiferromagnetism in graphene nanoribbon/hexagonal boron nitride heterojunctions arXiv preprint arXiv:2305.15214, 2023.
  67. Rhone, Trevor David and Bhattarai, Romakanta and Gavras, Haralambos and Lusch, Bethany and Salim, Misha and Mattheakis, Marios and Larson, Daniel T and Krockenberger, Yoshiharu and Kaxiras, Efthimios 2023. Artificial Intelligence Guided Studies of van der Waals Magnets Advanced Theory and Simulations, pp. 2300019, 2023.
  68. Zhu, Ziyan and Lu, Jonathan and Angeli, Mattia and Larson, Daniel and Kaxiras, Efthimios 2023. A multiscale low-energy continuum model for moir{\'e} phonons Bulletin of the American Physical Society, 2023.
  69. Ossiander, Marcus and Meretska, Maryna Leonidivna and Hampel, Hana Kristin and Lim, Soon Wei Daniel and Knefz, Nico and Jauk, Thomas and Capasso, Federico and Schultze, Martin 2023. Extreme ultraviolet metalens by vacuum guiding Science Vol. 380, No. 6640, pp. 59--63, 2023.
  70. Sommer, Alice J and Okonkwo, Jude and Monteiro, Jonathan and Bind, Marie-Abèle C 2023. A permutation-based approach using a rank-based statistic to identify sex differences in epigenetics Scientific Reports Vol. 13, No. 1, pp. 14838, 2023.
  71. Venianakis, Themistoklis and Siskos, Michael G and Papamokos, George and Gerothanassis, Ioannis P 2023. Structural Studies of Monounsaturated and ω-3 Polyunsaturated Free Fatty Acids in Solution with the Combined Use of NMR and DFT Calculations—Comparison with the Liquid State Molecules Vol. 28, No. 16, pp. 6144, 2023.
  72. Edenhofer, Gordian and Zucker, Catherine and Frank, Philipp and Saydjari, Andrew K and Speagle, Joshua S and Finkbeiner, Douglas and Enßlin, Torsten 2023. A Parsec-Scale Galactic 3D Dust Map out to 1.25 kpc from the Sun arXiv preprint arXiv:2308.01295, 2023.
  73. Nakahara, Shinichi and Kleckner, Kaylin and Barbosa, Eduardo P and Lourenço, Giselle M and Casagrande, Mirna M and Willmott, Keith R and Freitas, André VL 2023.  Reassessment of the type locality of Euptychiastigmatica Godman, 1905, with the description of two new sibling species from Amazonia (Lepidoptera, Nymphalidae, Satyrinae, Satyrini) ZooKeys Vol. 1167, pp. 57, 2023.
  74. Halldórsdóttir, Katrín and Llanos-Garrido, Alejandro and Einarsson, Axel Wilhelm and Sackton, Timothy B and Árnason, Einar 2023. Widespread but spotty: Atlantic cod is a complex of five species through ecological speciation. bioRxiv, pp. 2023--06, 2023.
  75. Østerstrøm, Freja F and Klobas, J Eric and Kennedy, Robert P and Cadoux, Anita and Wilmouth, David M 2023. Sensitivity of stratospheric ozone to the latitude, season, and halogen content of a contemporary explosive volcanic eruption Scientific Reports Vol. 13, No. 1, pp. 6457, 2023.
  76. Tikhanovskaya, Maria and Lavasani, Ali and Fisher, Matthew and Vijay, Sagar 2023. Universality of the cross entropy in Z2 symmetric monitored quantum circuits arXiv preprint arXiv:2306.00058, 2023.

2022 (63 publications)

  1. Berardi, Andrea E and Betancourt Morej{\'o}n, Ana C and Hopkins, Robin 2022. Convergence without divergence in North American red-flowering Silene Frontiers in Plant Science, pp. 2650, 2022.
  2. Hosseinzadeh, Griffin and Berger, Edo and Metzger, Brian D and Gomez, Sebastian and Nicholl, Matt and Blanchard, Peter 2022. Bumpy declining light curves are common in hydrogen-poor superluminous supernovae The Astrophysical Journal Vol. 933, No. 1, pp. 14, 2022.
  3. Olson, Connor I and Geyman, Benjamin M and Thackray, Colin P and Krabbenhoft, David P and Tate, Michael T and Sunderland, Elsie M and Driscoll, Charles T 2022. Mercury in soils of the conterminous United States: patterns and pools Environmental Research Letters Vol. 17, No. 7, pp. 074030, 2022.
  4. Baum, Mark 2022. Critical analysis of Mediterranean sea level limit cycles during the Messinian salinity crisis arXiv preprint arXiv:2205.12889, 2022.
  5. Lai, Peggy and Nguyen, Long and Okin, Daniel and Drew, David and Battista, Vincent and Jesudasen, Sirus and Kuntz, Thomas and Bhosle, Amrisha and Thompson, Kelsey and Reinicke, Trenton and others 2022. Metagenomic assessment of gut microbial communities and risk of severe COVID-19 2022.
  6. Lu, Jonathan Z and Bravo, Rodrigo A and Hou, Kaiying and Dagnew, Gebremedhin A and Yelin, Susanne F and Najafi, Khadijeh 2022. Learning quantum symmetries with interactive quantum-classical variational algorithms arXiv preprint arXiv:2206.11970, 2022.
  7. Ryals, Dylan and de Medeiros, Bruno and Farrell, Brian 2022. Migratory beekeeping facilitates genetic admixture in populations of the honeybee parasite Varroa destructor Authorea Preprints, 2022.
  8. Zhang, Yancong and Bhosle, Amrisha and Bae, Sena and McIver, Lauren J and Pishchany, Gleb and Accorsi, Emma K and Thompson, Kelsey N and Arze, Cesar and Wang, Ya and Subramanian, Ayshwarya and others 2022. Discovery of bioactive microbial gene products in inflammatory bowel disease Nature, pp. 1--7, 2022.
  9. Ossiander, M and Meretska, ML and Rourke, S and Spaegele, CM and Yin, X and Benea-Chelmus, IC and Capasso, F 2022. Metasurface-Stabilized Optical Microcavities arXiv preprint arXiv:2208.06718, 2022.
  10. Baum, Mark and Fu, Minmin 2022. Insights from Simple Stochastic Models of Earth's Long-Term Carbon Cycle and Climate arXiv preprint arXiv:2208.02793, 2022.
  11. Braglia, Matteo and Chen, Xingang and Hazra, Dhiraj Kumar 2022. Uncovering the history of cosmic inflation from anomalies in cosmic microwave background spectra The European Physical Journal C Vol. 82, No. 5, pp. 1--8, 2022.
  12. Wang, Kai and Xu, Lily and Perrault, Andrew and Reiter, Michael K and Tambe, Milind 2022. Coordinating followers to reach better equilibria: End-to-end gradient descent for stackelberg games Proceedings of the AAAI Conference on Artificial Intelligence Vol. 36, No. 5, pp. 5219--5227, 2022.
  13. Lopatko Lindman, Karin and Jonsson, Caroline and Weidung, Bodil and Olsson, Jan and Pandey, Janardan P and Prokopenko, Dmitry and Tanzi, Rudolph E and Hallmans, G{\"o}ran and Eriksson, Sture and Elgh, Fredrik and others 2022. PILRA polymorphism modifies the effect of APOE4 and GM17 on Alzheimer’s disease risk Scientific Reports Vol. 12, No. 1, pp. 1--8, 2022.
  14. Baum, Mark and Sholes, Steven and Hwang, Andrew 2022. Impact craters and the observability of ancient martian shorelines Icarus Vol. 387, pp. 115178, 2022.
  15. Mahinpei, Anita and Kostic, Zona and Tanner, Chris 2022. LineCap: Line Charts for Data Visualization Captioning Models arXiv preprint arXiv:2207.07243, 2022.
  16. Mishra-Sharma, Siddharth and Yang, Ge 2022. Strong Lensing Source Reconstruction Using Continuous Neural Fields arXiv preprint arXiv:2206.14820, 2022.
  17. Kalinowski, Marcin and Samajdar, Rhine and Melko, Roger G and Lukin, Mikhail D and Sachdev, Subir and Choi, Soonwon 2022. Bulk and boundary quantum phase transitions in a square Rydberg atom array Physical Review B Vol. 105, No. 17, pp. 174417, 2022.
  18. Vyas, Nikhil and Bansal, Yamini and Nakkiran, Preetum 2022. Limitations of the NTK for Understanding Generalization in Deep Learning arXiv preprint arXiv:2206.10012, 2022.
  19. Johnny Ho and David W. Schmitz 2022. A method for computing hadron-nucleus cross sections in fully active sampling calorimetric targets 2022.
  20. Patsalidis, Nikolaos and Papamokos, George and Floudas, George and Harmandaris, Vagelis 2022. Understanding the Interaction between Polybutadiene and Alumina via Density Functional Theory Calculations and Machine-Learned Atomistic Simulations The Journal of Physical Chemistry C Vol. 126, No. 39, pp. 16792--16803, 2022.
  21. Sohn, Jubee and Geller, Margaret J and Vogelsberger, Mark and Borrow, Josh 2022. IllustrisTNG Snapshots for 10 Gyr of Dynamical Evolution of Brightest Cluster Galaxies and Their Host Clusters The Astrophysical Journal Vol. 938, No. 1, pp. 3, 2022.
  22. Liu, Tianjia and Mickley, Loretta J and Patel, Piyushkumar N and Gautam, Ritesh and Jain, Meha and Singh, Sukhwinder and DeFries, RS and Marlier, ME 2022. Cascading Delays in the Monsoon Rice Growing Season and Postmonsoon Agricultural Fires Likely Exacerbate Air Pollution in North India Journal of Geophysical Research: Atmospheres Vol. 127, No. 24, pp. e2022JD036790, 2022.
  23. Foucher, Alexandre C and Owen, Cameron J and Shirman, Tanya and Aizenberg, Joanna and Kozinsky, Boris and Stach, Eric A 2022. Atomic-Scale STEM Analysis Shows Structural Changes of Au--Pd Nanoparticles in Various Gaseous Environments The Journal of Physical Chemistry C Vol. 126, No. 42, pp. 18047--18056, 2022.
  24. Baum, Mark and Fu, Minmin 2022. Simple Stochastic Modeling of Snowball Probability Throughout Earth History Geochemistry, Geophysics, Geosystems Vol. 23, No. 11, pp. e2022GC010611, 2022.
  25. Boily, Marie-Claude and Barnabas, Ruanne V and R{\"o}nn, Minttu M and Bayer, Cara J and van Schalkwyk, Cari and Soni, Nirali and Rao, Darcy W and Staadegaard, Lisa and Liu, Gui and Silhol, Romain and others 2022. Estimating the effect of HIV on cervical cancer elimination in South Africa: Comparative modelling of the impact of vaccination and screening Eclinicalmedicine Vol. 54, pp. 101754, 2022.
  26. Thompson, Kelsey N and Oulhote, Youssef and Weihe, Pal and Wilkinson, Jeremy E and Ma, Siyuan and Zhong, Huanzi and Li, Junhua and Kristiansen, Karsten and Huttenhower, Curtis and Grandjean, Philippe 2022. Effects of Lifetime Exposures to Environmental Contaminants on the Adult Gut Microbiome Environmental Science \& Technology Vol. 56, No. 23, pp. 16985--16995, 2022.
  27. Zhu, Ziyan and Mattheakis, Marios and Pan, Weiwei and Kaxiras, Efthimios 2022. HubbardNet: Efficient Predictions of the Bose-Hubbard Model Spectrum with Deep Neural Networks arXiv preprint arXiv:2212.13678, 2022.
  28. Lim, Soon Wei Daniel and Park, Joon-Suh and Kazakov, Dmitry and Spaegele, Christina M and Dorrah, Ahmed H and Meretska, Maryna L and Capasso, Federico 2022. Point singularity array with metasurfaces arXiv preprint arXiv:2211.15012, 2022.
  29. Saydjari, Andrew K and Zucker, Catherine and Peek, JEG and Finkbeiner, Douglas P 2022. Measuring the 8621$\backslash$r $\{$A$\}$ Diffuse Interstellar Band in Gaia DR3 RVS Spectra: Obtaining a Clean Catalog by Marginalizing over Stellar Types arXiv preprint arXiv:2212.03879, 2022.
  30. Spyridakou, Marianna and Gardiner, Christina and Papamokos, George and Frey, Holger and Floudas, George 2022. Dynamics of Poly (cyclohexene carbonate) as a Function of Molar Mass ACS Applied Polymer Materials, 2022.
  31. Paik, Donggi and Yao, Lina and Zhang, Yancong and Bae, Sena and D’Agostino, Gabriel D and Zhang, Minghao and Kim, Eunha and Franzosa, Eric A and Avila-Pacheco, Julian and Bisanz, Jordan E and others 2022. Human gut bacteria produce TH17-modulating bile acid metabolites Nature, pp. 1--6, 2022.
  32. Ostdiek, Bryan and Rivero, Ana Diaz and Dvorkin, Cora 2022. Extracting the subhalo mass function from strong lens images with image segmentation The Astrophysical Journal Vol. 927, No. 1, pp. 83, 2022.
  33. Saydjari, Andrew K and Finkbeiner, Douglas P 2022. Equivariant wavelets: Fast rotation and translation invariant wavelet scattering transforms IEEE Transactions on Pattern Analysis and Machine Intelligence, 2022.
  34. Fraser, Katherine and Homiller, Samuel and Mishra, Rashmish K and Ostdiek, Bryan and Schwartz, Matthew D 2022. Challenges for unsupervised anomaly detection in particle physics Journal of High Energy Physics Vol. 2022, No. 3, pp. 1--31, 2022.
  35. Conroy, Charlie and Weinberg, David H and Naidu, Rohan P and Buck, Tobias and Johnson, James W and Cargile, Phillip and Bonaca, Ana and Caldwell, Nelson and Chandra, Vedant and Han, Jiwon Jesse and others 2022. Birth of the Galactic Disk Revealed by the H3 Survey arXiv preprint arXiv:2204.02989, 2022.
  36. Sun, Hongwei and Eastham, Sebastian and Keith, David 2022. Developing a Plume-in-Grid Model for Plume Evolution in the Stratosphere Journal of Advances in Modeling Earth Systems, pp. e2021MS002816, 2022.
  37. Weinberger, Rainer and Hernquist, Lars 2022. Modeling multi-phase gases in cosmological simulations using compressible multi-fluid hydrodynamics arXiv preprint arXiv:2204.05316, 2022.
  38. Naidu, Rohan P and Conroy, Charlie and Bonaca, Ana and Zaritsky, Dennis and Ting, Yuan-Sen and Caldwell, Nelson and Cargile, Phillip A and Speagle, Joshua S and Chandra, Vedant and Johnson, Benjamin D and others 2022. Live Fast, Die $$\backslash$alpha $-Enhanced: The Mass-Metallicity-$$\backslash$alpha $ Relation of the Milky Way's Disrupted Dwarf Galaxies arXiv preprint arXiv:2204.09057, 2022.
  39. Freeman, Bob and McNeill, Katy and Castro, Alma 2022. An Overview and Practical Use 2022.
  40. Asadi, Pouya and Cesarotti, Cari and Fraser, Katherine and Homiller, Samuel and Parikh, Aditya 2022. Oblique Lessons from the $ W $ Mass Measurement at CDF II arXiv preprint arXiv:2204.05283, 2022.
  41. Wu, Yingying and Xu, Shusheng and Yau, Shing-Tung and Wu, Yi 2022. PhyloTransformer: A Self-supervised Discriminative Model for Mutation Prediction Based on a Multi-head Self-attention Mechanism 2022.
  42. Sabti, Nashwan and Mu{\~n}oz, Julian B and Blas, Diego 2022. New Roads to the Small-scale Universe: Measurements of the Clustering of Matter with the High-redshift UV Galaxy Luminosity Function The Astrophysical Journal Letters Vol. 928, No. 2, pp. L20, 2022.
  43. Park, Core Francisco and Allys, Erwan and Villaescusa-Navarro, Francisco and Finkbeiner, Douglas P 2022. Quantification of high dimensional non-Gaussianities and its implication to Fisher analysis in cosmology arXiv preprint arXiv:2204.05435, 2022.
  44. Ostdiek, Bryan 2022. Deep set auto encoders for anomaly detection in particle physics SciPost Physics Vol. 12, No. 1, pp. 045, 2022.
  45. Wu, Yingying and Wu, Tianqi and Yau, Shing-Tung 2022. Surface Eigenvalues with Lattice-Based Approximation In comparison with analytical solution arXiv preprint arXiv:2203.03603, 2022.
  46. Scott Zolkos, Alexander V. Zhulidov, Tatiana Yu. Gurtovaya, Vyacheslav V. Gordeev, Sergey Berdnikov, Nadezhda Pavlova, Evgenia A. Kalko, Yana A. Kuklina, Danil A. Zhulidov, Lyudmila S. Kosmenko, Alexander I. Shiklomanov, Anya Suslova, Benjamin M. Geyman, Colin P. Thackray, Elsie M. Sunderland, Suzanne E. Tank, James W. McClelland, Robert G. M. Spencer, David P. Krabbenhoft, Richard Robarts, and Robert M. Holmes 2022. Multidecadal declines in particulate mercury and sediment export from Russian rivers in the pan-Arctic basin PNAS Vol. 119, No. 14, https://doi.org/10.1073/pnas.2119857119
  47. Maity, Smarak and Pingault, Benjamin and Joe, Graham and Chalupnik, Michelle and Assumpcao, Daniel and Cornell, Eliza and Shao, Linbo and Loncar, Marko 2022. Mechanical Control of a Single Nuclear Spin Physical Review X Vol. 12, No. 1, pp. 011056, 2022.
  48. Ji, Yinqiu and Baker, Christopher and Popescu, Viorel D and Wang, Jiaxin and Wu, Chunying and Wang, Zhengyang and Li, Yuanheng and Wang, Lin and Hua, Chaolang and Yang, Zhongxing and others 2022. Measuring protected-area effectiveness using vertebrate distributions from leech iDNA Nature Communications Vol. 13, No. 1, pp. 1--17, 2022.
  49. Eastham, S.D., M.S. Long, C.A. Keller, E. Lundgren, R.M. Yantosca, J. Zhuang, C. Li, C.J. Lee, M. Yannetti, B.M. Auer, T.L. Clune, J. Kouatchou, W.M. Putman, M.A. Thompson, A.L. Trayanov, A.M. Molod, R.V. Martin, and D.J. Jacob 2022. GEOS-Chem High Performance (GCHP): A next-generation implementation of the GEOS-Chem chemical transport model for massively parallel applications, Geosci. Mod. Dev., 11, 2941-2953, 2018. Geosci. Mod. Dev., 11, 2941-2953, 2018. [PDF]
  50. Ding, Feng and Wordsworth, Robin D 2022. Prospects for water vapor detection in the atmospheres of temperate and arid rocky exoplanets around M-dwarf stars The Astrophysical Journal Letters Vol. 925, No. 1, pp. L8, 2022.
  51. Xie, Yu and Vandermause, Jonathan and Ramakers, Senja and Protik, Nakib H and Johansson, Anders and Kozinsky, Boris 2022. Uncertainty-aware molecular dynamics from Bayesian active learning: Phase Transformations and Thermal Transport in SiC arXiv preprint arXiv:2203.03824, 2022.
  52. Park, Junwoo and Kodaimati, Mohamad S and Belding, Lee and Root, Samuel E and Schatz, George C and Whitesides, George M 2022. Controlled Hysteresis of Conductance in Molecular Tunneling Junctions ACS nano, 2022.
  53. Prokopenko, Dmitry and Lee, Sanghun and Hecker, Julian and Mullin, Kristina and Morgan, Sarah and Katsumata, Yuriko and Weiner, Michael W and Fardo, David W and Laird, Nan and Bertram, Lars and others 2022. Region-based analysis of rare genomic variants in whole-genome sequencing datasets reveal two novel Alzheimer’s disease-associated genes: DTNB and DLG2 Molecular Psychiatry, pp. 1--7, 2022.
  54. Ntampaka, Michelle and Vikhlinin, Alexey 2022. The Importance of Being Interpretable: Toward an Understandable Machine Learning Encoder for Galaxy Cluster Cosmology The Astrophysical Journal Vol. 926, No. 1, pp. 45, 2022.
  55. O'Neil, Stephanie and Borrow, Josh and Vogelsberger, Mark and Diemer, Benedikt 2022. The impact of galaxy selection on the splashback boundaries of galaxy clusters arXiv preprint arXiv:2202.05277, 2022.
  56. Sabti, Nashwan and Mu{\~n}oz, Julian B and Blas, Diego 2022. Galaxy luminosity function pipeline for cosmology and astrophysics Physical Review D Vol. 105, No. 4, pp. 043518, 2022.
  57. Krastev, Plamen G 2022. Translating Neutron Star Observations to Nuclear Symmetry Energy via Deep Neural Networks Galaxies Vol. 10, No. 1, pp. 16, 2022.
  58. Shen, Xuejian and Brinckmann, Thejs and Rapetti, David and Vogelsberger, Mark and Mantz, Adam and Zavala, Jes{\'u}s and Allen, Steven W 2022. X-ray morphology of cluster-mass haloes in self-interacting dark matter arXiv preprint arXiv:2202.00038, 2022.
  59. Ostdiek, Bryan and Rivero, A Diaz and Dvorkin, Cora and Berdeu, A and Langlois, M and Vachier, F and Cernicharo, J and Ag{\'u}ndez, M and Cabezas, C and Fuentetaja, R and others 2022. Image segmentation for analyzing galaxy-galaxy strong lensing systems Astronomy \& Astrophysics Vol. 657, pp. L14, 2022.
  60. Aarrestad, Thea and van Beekveld, Melissa and Bona, Marcella and Boveia, Antonio and Caron, Sascha and Davies, Joe and De Simone, Andrea and Doglioni, Caterina and Duarte, Javier and Farbin, Amir and others 2022. The dark machines anomaly score challenge: benchmark data and model independent event classification for the Large Hadron Collider SciPost Physics Vol. 12, No. 1, pp. 043, 2022.
  61. Saydjari, Andrew K and Finkbeiner, Douglas P 2022. Photometry on Structured Backgrounds: Local Pixelwise Infilling by Regression arXiv preprint arXiv:2201.07246, 2022.
  62. Fang, Shiang and Ye, Linda and Ghimire, Madhav Prasad and Kang, Mingu and Liu, Junwei and Han, Minyong and Fu, Liang and Richter, Manuel and van den Brink, Jeroen and Kaxiras, Efthimios and others 2022. Ferromagnetic helical nodal line and Kane-Mele spin-orbit coupling in kagome metal Fe 3 Sn 2 Physical Review B Vol. 105, No. 3, pp. 035107, 2022.
  63. Neal, Stephanie and McCulloch, Kyle J and Napoli, Francesca R and Daly, Christina M and Coleman, James H and Koenig, Kristen M 2022. Co-option of the limb patterning program in cephalopod eye development BMC Biology Vol. 20, No. 1, pp. 1--11, 2022.

2021 (68 publications)

  1. Wu, Y., Mooring, T.A. and Linz, M., 2021. 2021. Policy and weather influences on mobility during the early US COVID-19 Proceedings of the National Academy of Sciences, 118(22).
  2. Huang, Theodore and Ploenzke, Matthew and Braun, Danielle 2021. SNIP: An Adaptation of Sorted Neighborhood Methods for Deduplicating Pedigree Data arXiv preprint arXiv:2108.08773, 2021.
  3. Phillips, Angela M and Lawrence, Katherine R and Moulana, Alief and Dupic, Thomas and Chang, Jeffrey and Johnson, Milo S and Cvijovic, Ivana and Mora, Thierry and Walczak, Aleksandra M and Desai, Michael M 2021. Binding affinity landscapes constrain the evolution of broadly neutralizing anti-influenza antibodies bioRxiv, 2021.
  4. Bell, Elliot and Zhu, Ziyan and Watanabe, Kenji and Taniguchi, Takashi and Kaxiras, Efthimios and Luskin, Mitchell and Wang, Ke and others 2021. Gate-tunable Veselago Interference in a Bipolar Graphene Microcavity arXiv preprint arXiv:2106.09651, 2021.
  5. Maity, Smarak and Pingault, Benjamin and Joe, Graham and Chalupnik, Michelle and Assump{\c{c}}{\~a}o, Daniel and Cornell, Eliza and Shao, Linbo and Lon{\v{c}}ar, Marko 2021. Coherent coupling of mechanics to a single nuclear spin arXiv preprint arXiv:2107.10961, 2021.
  6. Semeghini, Giulia and Levine, Harry and Keesling, Alexander and Ebadi, Sepehr and Wang, Tout T and Bluvstein, Dolev and Verresen, Ruben and Pichler, Hannes and Kalinowski, Marcin and Samajdar, Rhine and others 2021. Probing Topological Spin Liquids on a Programmable Quantum Simulator arXiv preprint arXiv:2104.04119, 2021.
  7. Ye, Linda and Fang, Shiang and Kang, Min Gu and Kaufmann, Josef and Lee, Yonghun and Denlinger, Jonathan and Jozwiak, Chris and Bostwick, Aaron and Rotenberg, Eli and Kaxiras, Efthimios and others 2021. A flat band-induced correlated kagome metal arXiv preprint arXiv:2106.10824, 2021.
  8. Earnest, Rebecca and R{\"o}nn, Minttu M and Bellerose, Meghan and Menon-Johansson, AS and Berruti, Andr{\'e}s A and Chesson, Harrell W and Gift, Thomas L and Hsu, Katherine K and Testa, Christian and Zhu, Lin and others 2021. Modeling the Cost-Effectiveness of Express Multi-Site Gonorrhea Screening among Men Who Have Sex with Men in the United States Sexually Transmitted Diseases, 2021.
  9. Vandermause, Jonathan and Xie, Yu and Lim, Jin Soo and Owen, Cameron J and Kozinsky, Boris 2021. Active learning of reactive Bayesian force fields: Application to heterogeneous hydrogen-platinum catalysis dynamics arXiv preprint arXiv:2106.01949, 2021.
  10. Prokopenko, Dmitry and Lee, Sanghun and Hecker, Julian and Mullin, Kristina and Morgan, Sarah and Katsumata, Yuriko and Weiner, Michael W and Fardo, David W and Laird, Nan and Bertram, Lars and others 2021. Region-based analysis of rare genomic variants in whole-genome sequencing datasets reveal two novel Alzheimer's disease-associated genes: DTNB and DLG2 medRxiv, 2021.
  11. Odintsova, TA and Serov, EA and Balashov, AA and Koshelev, MA and Koroleva, AO and Simonova, AA and Tretyakov, M Yu and Filippov, NN and Chistikov, DN and Finenko, AA and others 2021. CO2--CO2 and CO2--Ar continua at millimeter wavelengths Journal of Quantitative Spectroscopy and Radiative Transfer Vol. 258, pp. 107400, 2021.
  12. Wang, Pengcheng and Burley, John T and Liu, Yang and Chang, Jiang and Chen, De and Lu, Qi and Li, Shou-Hsien and Zhou, Xuming and Edwards, Scott and Zhang, Zhengwang 2021. Genomic Consequences of Long-Term Population Decline in Brown Eared Pheasant Molecular biology and evolution Vol. 38, No. 1, pp. 263--273, 2021.
  13. Chen, Qiuming and Wu, Yanchang and Huang, Zhaolin and Zhang, Wenli 2021. Kinetic study and molecular dynamics simulation of two novel mannose isomerases Catalysis Science \& Technology, 2021.
  14. Kleiner, Ned and Chan, Pak Wah and Wang, Lei and Ma, Ding and Kuang, Zhiming 2021. Effects of Climate Model Mean-State Bias on Blocking Underestimation Geophysical Research Letters Vol. 48, No. 13, pp. e2021GL094129, 2021.
  15. Yan, Yujing and Davis, Charles C and Dimitrov, Dimitar and Wang, Zhiheng and Rahbek, Carsten and Borregaard, Michael Krabbe 2021. Phytogeographic history of the Tea family inferred through high-resolution phylogeny and fossils Systematic Biology, 2021.
  16. Goulet-Scott, Benjamin E and Garner, Austin G and Hopkins, Robin 2021. Genomic analyses overturn two long-standing homoploid hybrid speciation hypotheses Evolution, 2021.
  17. Tang, Ming and Kaymaz, Yasin and Logeman, Brandon L and Eichhorn, Stephen and Liang, Zhengzheng S and Dulac, Catherine and Sackton, Timothy B 2021. Evaluating single-cell cluster stability using the Jaccard similarity index Bioinformatics Vol. 37, No. 15, pp. 2212--2214, 2021.
  18. Green, Gregory M and Rix, Hans-Walter and Tschesche, Leon and Finkbeiner, Douglas and Zucker, Catherine and Schlafly, Edward F and Rybizki, Jan and Fouesneau, Morgan and Andrae, Ren{\'e} and Speagle, Joshua 2021. Data-driven Stellar Models The Astrophysical Journal Vol. 907, No. 1, pp. 57, 2021.
  19. Saydjari, Andrew K and Portillo, Stephen KN and Slepian, Zachary and Kahraman, Sule and Burkhart, Blakesley and Finkbeiner, Douglas P 2021. Classification of Magnetohydrodynamic Simulations Using Wavelet Scattering Transforms The Astrophysical Journal Vol. 910, No. 2, pp. 122, 2021.
  20. Chamberlain, Catherine J and Cook, Benjamin I and Morales-Castilla, Ignacio and Wolkovich, Elizabeth M 2021. Climate change reshapes the drivers of false spring risk across European trees New Phytologist Vol. 229, No. 1, pp. 323--334, 2021.
  21. Xie, Michael E and Adam, Yoav and Fan, Linlin Z and B{\"o}hm, Urs L and Kinsella, Ian and Zhou, Ding and Rozsa, Marton and Singh, Amrita and Svoboda, Karel and Paninski, Liam and others 2021. High-fidelity estimates of spikes and subthreshold waveforms from 1-photon voltage imaging in vivo Cell reports Vol. 35, No. 1, pp. 108954, 2021.
  22. Lamichhaney, Sangeet and Catullo, Renee and Keogh, J Scott and Clulow, Simon and Edwards, Scott V and Ezaz, Tariq 2021. A bird-like genome from a frog: Mechanisms of genome size reduction in the ornate burrowing frog, Platyplectrum ornatum Proceedings of the National Academy of Sciences Vol. 118, No. 11, 2021.
  23. Zavatone-Veth, Jacob A and Pehlevan, Cengiz 2021. Exact priors of finite neural networks arXiv preprint arXiv:2104.11734, 2021.
  24. Graff, David E and Shakhnovich, Eugene I and Coley, Connor W 2021. Accelerating high-throughput virtual screening through molecular pool-based active learning Chemical Science, 2021.
  25. Li, Qing-Jie and K{\"u}{\c{c}}{\"u}kbenli, Emine and Lam, Stephen and Khaykovich, Boris and Kaxiras, Efthimios and Li, Ju 2021. Development of robust neural-network interatomic potential for molten salt Cell Reports Physical Science Vol. 2, No. 3, pp. 100359, 2021.
  26. Torrence, Margaret E and MacArthur, Michael R and Hosios, Aaron M and Valvezan, Alexander J and Asara, John M and Mitchell, James R and Manning, Brendan D 2021. The mTORC1-mediated activation of ATF4 promotes protein and glutathione synthesis downstream of growth signals Elife Vol. 10, pp. e63326, 2021.
  27. Chandrasekhar, Arun G and Goldsmith-Pinkham, Paul and Jackson, Matthew O and Thau, Samuel 2021. Interacting regional policies in containing a disease Proceedings of the National Academy of Sciences Vol. 118, No. 19, 2021.
  28. Fraser, Katherine and Homiller, Samuel and Mishra, Rashmish K and Ostdiek, Bryan and Schwartz, Matthew D 2021. Challenges for Unsupervised Anomaly Detection in Particle Physics arXiv preprint arXiv:2110.06948, 2021.
  29. {\c{S}}eng{\"u}l, At{\i}n{\c{c}} {\c{C}}a{\u{g}}an and Dvorkin, Cora and Ostdiek, Bryan and Tsang, Arthur 2021. Substructure Detection Reanalyzed: Dark Perturber shown to be a Line-of-Sight Halo arXiv preprint arXiv:2112.00749, 2021.
  30. Flesher, Forrest and Fraser, Katherine and Hutchison, Charles and Ostdiek, Bryan and Schwartz, Matthew D 2021. Parameter inference from event ensembles and the top-quark mass Journal of High Energy Physics Vol. 2021, No. 9, pp. 1--37, 2021.
  31. Saydjari, A.K. and Finkbeiner, D.P. 2021. Saydjari AK, Finkbeiner DP. Equivariant Wavelets: Fast Rotation and Translation Invariant Wavelet Scattering Transforms arXiv preprint arXiv:2104.11244.
  32. Muñoz, J.B., Bohr, S., Cyr-Racine, F.Y., Zavala, J. and Vogelsberger, M. 2021. ETHOS‐an effective theory of structure formation: Impact of dark acoustic oscillations on cosmic dawn Physical Review D, 103(4), p.043512.
  33. Ding, F. and Wordsworth, R.D. 2021. Multiple Moist Climate Equilibrium States on Arid Rocky M-dwarf Planets: A Last-saturation Tracer Analysis he Planetary Science Journal, 2(5), p.201.
  34. Ba, A.N.N., Lawrence, K.R., Rego-Costa, A., Gopalakrishnan, S., Temko, D., Michor, F. and Desai, M.M. 2021. Barcoded Bulk QTL mapping reveals highly polygenic and epistatic architecture of complex traits in yeast bioRxiv
  35. Li, Wei and Hang, Saiyu and Fang, Yuan and Bae, Sena and Zhang, Yancong and Wang, Gang and McCurry, Megan D and Bae, Munhyung and Franzosa, Eric A and Huttenhower, Curtis and others 2021. A Bacterial Bile Acid Metabolite Modulates Treg Activity through the Nuclear Hormone Receptor NR4A1 bioRxiv, 2021.
  36. Krastev, Plamen G 2021. Translating neutron star observations to nuclear symmetry energy via artificial neural networks arXiv preprint arXiv:2112.04089, 2021.
  37. Chamorro, Maria Lourdes and de Medeiros, Bruno AS and Farrell, Brian D 2021. First phylogenetic analysis of Dryophthorinae (Coleoptera, Curculionidae) based on structural alignment of ribosomal DNA reveals Cenozoic diversification Ecology and evolution Vol. 11, No. 5, pp. 1984--1998, 2021.
  38. Bravo, Gustavo A and Whitney, Bret M and Belmonte-Lopes, Ricardo and Bornschein, Marcos R and Aristiz{\'a}bal, Natalia and Beco, Renata and Battilana, Jaqueline and Naka, Luciano N and Aleixo, Alexandre and Pie, Marcio R and others 2021. Phylogenomic analyses reveal non-monophyly of the antbird genera Herpsilochmus and Sakesphorus (Thamnophilidae), with description of a new genus for Herpsilochmus sellowi. Ornithology Vol. 138, pp. 1--16, 2021.
  39. Ding, Feng and Wordsworth, Robin D 2021. Multiple moist climate equilibrium states on arid rocky M-dwarf planets: A last-saturation tracer analysis The Planetary Science Journal Vol. 2, No. 5, pp. 201, 2021.
  40. Shaidu, Yusuf and K{\"u}{\c{c}}{\"u}kbenli, Emine and Lot, Ruggero and Pellegrini, Franco and Kaxiras, Efthimios and de Gironcoli, Stefano 2021. A systematic approach to generating accurate neural network potentials: the case of carbon npj Computational Materials Vol. 7, No. 1, pp. 1--13, 2021.
  41. Cabrera-Ziri, Ivan and Conroy, Charlie 2021. Deriving ages and horizontal branch properties of integrated stellar populations arXiv preprint arXiv:2112.07562, 2021.
  42. Han, Minyong and Inoue, Hisashi and Fang, Shiang and John, Caolan and Ye, Linda and Chan, Mun K and Graf, David and Suzuki, Takehito and Ghimire, Madhav Prasad and Cho, Won Joon and others 2021. Evidence of two-dimensional flat band at the surface of antiferromagnetic kagome metal FeSn Nature communications Vol. 12, No. 1, pp. 1--10, 2021.
  43. Tung, Sudipta and Bakerlee, Christopher W and Phillips, Angela M and Ba, Alex N Nguyen and Desai, Michael M 2021. The Genetic Basis of Differential Autodiploidization in Evolving Yeast Populations bioRxiv, 2021.
  44. Augenbraun, Benjamin L and Lasner, Zack D and Frenett, Alexander and Sawaoka, Hiromitsu and Le, Anh T and Doyle, John M and Steimle, Timothy C 2021. Observation and laser spectroscopy of ytterbium monomethoxide, YbOCH 3 Physical Review A Vol. 103, No. 2, pp. 022814, 2021.
  45. Hanakata, Paul Z and Bhabesh, Sourav S and Bowick, Mark J and Nelson, David R and Yllanes, David 2021. Thermal buckling and symmetry breaking in thin ribbons under compression Extreme Mechanics Letters Vol. 44, pp. 101270, 2021.
  46. Jones, Katrina E and Dickson, Blake V and Angielczyk, Kenneth D and Pierce, Stephanie E 2021. Adaptive landscapes challenge the “lateral-to-sagittal” paradigm for mammalian vertebral evolution Current Biology Vol. 31, No. 9, pp. 1883--1892, 2021.
  47. Neal, Stephanie and McCulloch, Kyle J and Napoli, Francesca and Daly, Christina M and Coleman, James H and Koenig, Kristen M 2021. Co-option of the Limb Patterning Program in Cephalopod Lens Development bioRxiv, 2021.
  48. Hemingway, Jordon D 2021. Biosynthetic isotope fractionation negligibly impacts biomarker 14C ages Organic Geochemistry Vol. 158, pp. 104267, 2021.
  49. Ananiadou, Antonela and Papamokos, George and Steinhart, Martin and Floudas, George 2021. Effect of confinement on the dynamics of 1-propanol and other monohydroxy alcohols The Journal of Chemical Physics Vol. 155, No. 18, pp. 184504, 2021.
  50. Fang, Shiang and Ye, Linda and Ghimire, Madhav Prasad and Kang, Min Gu and Liu, Junwei and Fu, Liang and Richter, Manuel and Brink, Jeroen van den and Kaxiras, Efthimios and Comin, Riccardo and others 2021. Ferromagnetic helical nodal line and Kane-Mele spin-orbit coupling in kagome metal Fe3Sn2 arXiv preprint arXiv:2103.08803, 2021.
  51. Wu, Yingying and Xu, Shusheng and Yau, Shing-Tung and Wu, Yi 2021. PhyloTransformer: A Discriminative Model for Mutation Prediction Based on a Multi-head Self-attention Mechanism arXiv preprint arXiv:2111.01969, 2021.
  52. Saydjari, Andrew K and Finkbeiner, Douglas P 2021. Equivariant Wavelets: Fast Rotation and Translation Invariant Wavelet Scattering Transforms arXiv preprint arXiv:2104.11244, 2021.
  53. Zhang, Kunyan and Guo, Yunfan and Larson, Daniel T and Zhu, Ziyan and Fang, Shiang and Kaxiras, Efthimios and Kong, Jing and Huang, Shengxi 2021. Spectroscopic Signatures of Interlayer Coupling in Janus MoSSe/MoS2 Heterostructures ACS nano Vol. 15, No. 9, pp. 14394--14403, 2021.
  54. Chan, Pak Wah and Hassanzadeh, Pedram and Kuang, Zhiming 2021. Eddy Length Scale Response to Static Stability Change in an Idealized Dry Atmosphere: A Linear Response Function Approach Journal of the Atmospheric Sciences, 2021.
  55. Wang, Kai and Shah, Sanket and Chen, Haipeng and Perrault, Andrew and Doshi-Velez, Finale and Tambe, Milind 2021. Learning MDPs from Features: Predict-Then-Optimize for Sequential Decision Making by Reinforcement Learning Advances in Neural Information Processing Systems Vol. 34, 2021.
  56. Tang, Haoning and Du, Fan and Carr, Stephen and DeVault, Clayton and Mello, Olivia and Mazur, Eric 2021. Modeling the optical properties of Twisted Bilayer Photonic Crystals arXiv preprint arXiv:2103.13600, 2021.
  57. Braglia, Matteo and Chen, Xingang and Hazra, Dhiraj Kumar 2021. Uncovering the History of Cosmic Inflation from Anomalies in Cosmic Microwave Background Spectra arXiv preprint arXiv:2106.07546, 2021.
  58. Choma, Ernani F and Evans, John S and G{\'o}mez-Ib{\'a}{\~n}ez, Jos{\'e} A and Di, Qian and Schwartz, Joel D and Hammitt, James K and Spengler, John D 2021. Health benefits of decreases in on-road transportation emissions in the United States from 2008 to 2017 Proceedings of the National Academy of Sciences Vol. 118, No. 51, 2021.
  59. Bauer, Evan B and Chandra, Vedant and Shen, Ken J and Hermes, JJ 2021. Masses of White Dwarf Binary Companions to Type Ia Supernovae Measured from Runaway Velocities The Astrophysical Journal Letters Vol. 923, No. 2, pp. L34, 2021.
  60. Du, Chrisy Xiyu and Zhang, Hanyu Alice and Pearson, Tanner and Ng, Jakin and McEuen, Paul and Cohen, Itai and Brenner, Michael P 2021. Programming Interactions in Magnetic Handshake Materials arXiv preprint arXiv:2112.02614, 2021.
  61. Kalinowski, Marcin and Samajdar, Rhine and Melko, Roger G and Lukin, Mikhail D and Sachdev, Subir and Choi, Soonwon 2021. Bulk and Boundary Quantum Phase Transitions in a Square Rydberg Atom Array arXiv preprint arXiv:2112.10790, 2021.
  62. Ostdiek, Bryan 2021. Deep Set Auto Encoders for Anomaly Detection in Particle Physics arXiv preprint arXiv:2109.01695, 2021.
  63. Gardezi, S Minhal and Pirie, Harris and Carr, Stephen and Dorrell, William and Hoffman, Jennifer E 2021. Simulating twistronics in acoustic metamaterials 2D Materials Vol. 8, No. 3, pp. 031002, 2021.
  64. Golja, CM and Chew, LW and Dykema, JA and Keith, DW 2021. Aerosol Dynamics in the Near Field of the SCoPEx Stratospheric Balloon Experiment Journal of Geophysical Research: Atmospheres Vol. 126, No. 4, pp. e2020JD033438, 2021.
  65. Graff, David E and Coley, Connor W 2021. pyscreener: A Python Wrapper for Computational Docking Software arXiv preprint arXiv:2112.10575, 2021.
  66. Theodoridis, Athanasios and Papamokos, George and Wiesenfeldt, Mario P and Wollenburg, Marco and Müllen, Klaus and Glorius, Frank and Floudas, George 2021. Polarity Matters: Dielectric Relaxation in All-cis-Multifluorinated Cycloalkanes The Journal of Physical Chemistry B Vol. 125, No. 14, pp. 3700--3709, 2021.
  67. Lassance, Jean-Marc and Ding, Bao-Jian and L{\"o}fstedt, Christer 2021. Evolution of the codling moth pheromone via an ancient gene duplication BMC biology Vol. 19, No. 1, pp. 1--20, 2021.
  68. Li{\'e}nard, Marjorie A and Bernard, Gary D and Allen, Andrew and Lassance, Jean-Marc and Song, Siliang and Childers, Richard Rabideau and Yu, Nanfang and Ye, Dajia and Stephenson, Adriana and Valencia-Montoya, Wendy A and others 2021. The evolution of red color vision is linked to coordinated rhodopsin tuning in lycaenid butterflies Proceedings of the National Academy of Sciences Vol. 118, No. 6, 2021.

2020 (45 publications)

  1. Gu, Meng and Conroy, Charlie and Diemer, Benedikt and Hernquist, Lars and Marinacci, Federico and Nelson, Dylan and Pakmor, R{\"u}diger and Pillepich, Annalisa and Vogelsberger, Mark 2020. Coordinated Assembly of Galaxy Groups and Clusters in the IllustrisTNG Simulations arXiv preprint arXiv:2010.04166, 2020.
  2. Li, Chenyuan and Carr, Stephen and Zhu, Ziyan and Kaxiras, Efthimios and Sachdev, Subir and Kruchkov, Alex 2020. Coexistence of ultraheavy and ultrarelativistic Dirac quasiparticles in sandwiched trilayer graphene. Bulletin of the American Physical Society Vol. 65, 2020.
  3. Bitran, Amir and Jacobs, William M and Shakhnovich, Eugene 2020. DBFOLD: An efficient algorithm for computing folding pathways of complex proteins bioRxiv, 2020.
  4. Kalouptsidi, Myrto and Kitamura, Yuichi and Lima, Lucas and Souza-Rodrigues, Eduardo A 2020. Partial identification and inference for dynamic models and counterfactuals 2020.
  5. Tabri, Rami V and Walker, Christopher D 2020. Inference for Moment Inequalities: A Constrained Moment Selection Procedure arXiv preprint arXiv:2008.09021, 2020.
  6. Dai, Chenguang 2020. Methods on Model Selection: Bayes Factor Approximation and False Discovery Rate Control 2020.
  7. Weninger, Nicolas 2020. Electro-Acoustic Modulation of Surface Acoustic Waves on Thin-Film Lithium Niobate Substrate 2020.
  8. Sondak, David and Protopapas, Pavlos 2020. Learning a Reduced Basis of Dynamical Systems using an Autoencoder arXiv preprint arXiv:2011.07346, 2020.
  9. Germaine, T St and Ade, PAR and Ahmed, Zeeshan and Amiri, Mandana and Barkats, Denis and Thakur, R Basu and Bischoff, Colin A and Bock, James J and Boenish, Hans and Bullock, Eric and others 2020. Analysis of Temperature-to-Polarization Leakage in BICEP3 and Keck CMB Data from 2016 to 2018 Millimeter, Submillimeter, and Far-Infrared Detectors and Instrumentation for Astronomy X Vol. 11453, pp. 114532E, 2020.
  10. Brito, Jaqueline J and Mosqueiro, Thiago and Rotman, Jeremy and Xue, Victor and Chapski, Douglas J and la Hoz, Juan De and Matias, Paulo and Martin, Lana S and Zelikovsky, Alex and Pellegrini, Matteo and others 2020. Telescope: an interactive tool for managing large-scale analysis from mobile devices GigaScience Vol. 9, No. 1, pp. giz163, 2020.
  11. Obeid, Dina and Zavatone-Veth, Jacob A and Pehlevan, Cengiz 2020. Statistical structure of the trial-to-trial timing variability in synfire chains Physical Review E Vol. 102, No. 5, pp. 052406, 2020.
  12. Dai, Chenguang and Liu, Jun S 2020. Wang-Landau algorithm as stochastic optimization and its acceleration Physical Review E Vol. 101, No. 3, pp. 033301, 2020.
  13. Ding, Feng and Wordsworth, Robin D 2020. Stabilization of dayside surface liquid water via tropopause cold trapping on arid slowly rotating tidally locked planets The Astrophysical Journal Letters Vol. 891, No. 1, pp. L18, 2020.
  14. Wei, Xin and Chan, Pak Wah and Kuang, Zhiming 2020. Two-Point Mixing, Buoyancy Sorting, and Updraft Dilution in the RACORO Campaign Geophysical Research Letters Vol. 47, No. 23, pp. e2020GL090674, 2020.
  15. Sin, Simon Yung Wa and Lu, Lily and Edwards, Scott V 2020. De Novo Assembly of the Northern Cardinal (Cardinalis cardinalis) Genome Reveals Candidate Regulatory Regions for Sexually Dichromatic Red Plumage Coloration G3: Genes, Genomes, Genetics Vol. 10, No. 10, pp. 3541--3548, 2020.
  16. Nelson, Erica L and Khan, Saira A and Thorve, Swapna and Greenough, P Gregg 2020. Modeling pastoralist movement in response to environmental variables and conflict in Somaliland: Combining agent-based modeling and geospatial data Plos one Vol. 15, No. 12, pp. e0244185, 2020.
  17. Ji, Yinqiu and Baker, Christopher CM and Li, Yuanheng and Popescu, Viorel D and Wang, Zhengyang and Wang, Jiaxin and Wang, Lin and Wu, Chunying and Hua, Chaolang and Yang, Zhongxing and others 2020. Large-scale quantification of vertebrate biodiversity in ailaoshan nature reserve from leech iDNA BioRxiv, 2020.
  18. Baker, Christopher CM and Castillo Vardaro, Jessica A and Doak, Daniel F and Pansu, Johan and Puissant, J{\'e}r{\'e}my and Pringle, Robert M and Tarnita, Corina E 2020. Spatial patterning of soil microbial communities created by fungus-farming termites Molecular ecology Vol. 29, No. 22, pp. 4487--4501, 2020.
  19. Wang, Kai and Wilder, Bryan and Perrault, Andrew and Tambe, Milind 2020. Automatically Learning Compact Quality-aware Surrogates for Optimization Problems arXiv preprint arXiv:2006.10815, 2020.
  20. Samajdar, Rhine and Ho, Wen Wei and Pichler, Hannes and Lukin, Mikhail D and Sachdev, Subir 2020. Complex density wave orders and quantum phase transitions in a model of square-lattice Rydberg atom arrays Physical review letters Vol. 124, No. 10, pp. 103601, 2020.
  21. Bitran, Amir and Jacobs, William M and Shakhnovich, Eugene 2020. Validation of DBFOLD: An efficient algorithm for computing folding pathways of complex proteins PLoS computational biology Vol. 16, No. 11, pp. e1008323, 2020.
  22. Freedman, Adam H and Gaspar, John M and Sackton, Timothy B 2020. Short paired-end reads trump long single-end reads for expression analysis BMC bioinformatics Vol. 21, No. 1, pp. 1--11, 2020.
  23. Cornelison, James and Ade, PAR and Ahmed, Zeeshan and Amiri, Mandana and Barkats, Denis and Thakur, R Basu and Bischoff, Colin and Bock, JJ and Boenish, Hans and Bullock, Eric and others 2020. Polarization Calibration of the BICEP3 CMB polarimeter at the South Pole Millimeter, Submillimeter, and Far-Infrared Detectors and Instrumentation for Astronomy X Vol. 11453, pp. 1145327, 2020.
  24. Flamant, Cedric and Protopapas, Pavlos and Sondak, David 2020. Solving Differential Equations Using Neural Network Solution Bundles arXiv preprint arXiv:2006.14372, 2020.
  25. Larson, Daniel T and Carr, Stephen and Tritsaris, Georgios A and Kaxiras, Efthimios 2020. Effects of lithium intercalation in twisted bilayer graphene Physical Review B Vol. 101, No. 7, pp. 075407, 2020.
  26. Prokopenko, Dmitry and Hecker, Julian and Kirchner, Rory and Chapman, Brad A and Hoffman, Oliver and Mullin, Kristina and Hide, Winston and Bertram, Lars and Laird, Nan and DeMeo, Dawn L and others 2020. Identification of novel Alzheimer’s disease loci using sex-specific family-based association analysis of whole-genome sequence data Scientific reports Vol. 10, No. 1, pp. 1--9, 2020.
  27. Lemon, Christopher M and Maher, Andrew G and Mazzotti, Anthony R and Powers, David C and Gonzalez, Miguel I and Nocera, Daniel G 2020. Multielectron C--H photoactivation with an Sb (v) oxo corrole Chemical Communications Vol. 56, No. 39, pp. 5247--5250, 2020.
  28. Ntampaka, Michelle and Eisenstein, Daniel J and Yuan, Sihan and Garrison, Lehman H 2020. A Hybrid Deep Learning Approach to Cosmological Constraints from Galaxy Redshift Surveys The Astrophysical Journal Vol. 889, No. 2, pp. 151, 2020.
  29. Johnson, Benjamin D and Conroy, Charlie and Naidu, Rohan P and Bonaca, Ana and Zaritsky, Dennis and Ting, Yuan-Sen and Cargile, Phillip A and Han, Jiwon Jesse and Speagle, Joshua S 2020. A Diffuse Metal-poor Component of the Sagittarius Stream Revealed by the H3 Survey The Astrophysical Journal Vol. 900, No. 2, pp. 103, 2020.
  30. McCulloch, Kyle J and Koenig, Kristen M 2020. Kr{\"u}ppel-like factor/specificity protein evolution in the Spiralia and the implications for cephalopod visual system novelties Proceedings of the Royal Society B Vol. 287, No. 1937, pp. 20202055, 2020.
  31. Zucker, Catherine and Speagle, Joshua S and Schlafly, Edward F and Green, Gregory M and Finkbeiner, Douglas P and Goodman, Alyssa and Alves, Jo{\~a}o 2020. A compendium of distances to molecular clouds in the Star Formation Handbook Astronomy \& Astrophysics Vol. 633, pp. A51, 2020.
  32. Zhu, Ziyan and Carr, Stephen and Massatt, Daniel and Luskin, Mitchell and Kaxiras, Efthimios 2020. Twisted trilayer graphene: a precisely tunable platform for correlated electrons Physical review letters Vol. 125, No. 11, pp. 116404, 2020.
  33. Wu, Xiao and Nethery, Rachel C and Sabath, Benjamin M and Braun, Danielle and Dominici, Francesca 2020. Exposure to air pollution and COVID-19 mortality in the United States MedRxiv, 2020.
  34. Wu, X and Braun, D and Schwartz, J and Kioumourtzoglou, MA and Dominici, FJSA 2020. Evaluating the impact of long-term exposure to fine particulate matter on mortality among the elderly Science advances Vol. 6, No. 29, pp. eaba5692, 2020.
  35. Bind, M-AC and Rubin, DB 2020. When possible, report a Fisher-exact P value and display its underlying null randomization distribution Proceedings of the National Academy of Sciences Vol. 117, No. 32, pp. 19151--19158, 2020.
  36. Wu, Xiao and Nethery, Rachel C and Sabath, MB and Braun, Danielle and Dominici, Francesca 2020. Air pollution and COVID-19 mortality in the United States: Strengths and limitations of an ecological regression analysis Science advances Vol. 6, No. 45, pp. eabd4049, 2020.
  37. Naidu, Rohan P and Conroy, Charlie and Bonaca, Ana and Johnson, Benjamin D and Ting, Yuan-Sen and Caldwell, Nelson and Zaritsky, Dennis and Cargile, Phillip A 2020. Evidence from the H3 Survey that the Stellar Halo is Entirely Comprised of Substructure The Astrophysical Journal Vol. 901, No. 1, pp. 48, 2020.
  38. Bonaca, Ana and Conroy, Charlie and Cargile, Phillip A and Naidu, Rohan P and Johnson, Benjamin D and Zaritsky, Dennis and Ting, Yuan-Sen and Caldwell, Nelson and Han, Jiwon Jesse and Van Dokkum, Pieter 2020. Timing the Early Assembly of the Milky Way with the H3 Survey The Astrophysical Journal Letters Vol. 897, No. 1, pp. L18, 2020.
  39. Rodriguez, Carl L and Kremer, Kyle and Grudi{\'c}, Michael Y and Hafen, Zachary and Chatterjee, Sourav and Fragione, Giacomo and Lamberts, Astrid and Martinez, Miguel AS and Rasio, Frederic A and Weatherford, Newlin and others 2020. GW190412 as a third-generation black hole merger from a super star cluster The Astrophysical Journal Letters Vol. 896, No. 1, pp. L10, 2020.
  40. Mocz, Philip and Fialkov, Anastasia and Vogelsberger, Mark and Becerra, Fernando and Shen, Xuejian and Robles, Victor H and Amin, Mustafa A and Zavala, Jes{\'u}s and Boylan-Kolchin, Michael and Bose, Sownak and others 2020. Galaxy formation with BECDM--II. Cosmic filaments and first galaxies Monthly Notices of the Royal Astronomical Society Vol. 494, No. 2, pp. 2027--2044, 2020.
  41. Alves, Jo{\~a}o and Zucker, Catherine and Goodman, Alyssa A and Speagle, Joshua S and Meingast, Stefan and Robitaille, Thomas and Finkbeiner, Douglas P and Schlafly, Edward F and Green, Gregory M 2020. A Galactic-scale gas wave in the solar neighbourhood Nature Vol. 578, No. 7794, pp. 237--239, 2020.
  42. Corbett, Eamon C and Bravo, Gustavo A and Schunck, Fabio and Naka, Luciano N and Silveira, Lu{\'\i}s F and Edwards, Scott V 2020. Evidence for the Pleistocene Arc Hypothesis from genome-wide SNPs in a Neotropical dry forest specialist, the Rufous-fronted Thornbird (Furnariidae: Phacellodomus rufifrons) Molecular Ecology Vol. 29, No. 22, pp. 4457--4472, 2020.
  43. Hosseinzadeh, Griffin and Dauphin, Frederick and Villar, V Ashley and Berger, Edo and Jones, David O and Challis, Peter and Chornock, Ryan and Drout, Maria R and Foley, Ryan J and Kirshner, Robert P and others 2020. Photometric Classification of 2315 Pan-STARRS1 Supernovae with Superphot The Astrophysical Journal Vol. 905, No. 2, pp. 93, 2020.
  44. Baum, Mark and Wordsworth, Robin 2020. Groundwater flow to Gale Crater in an episodically warm climate Journal of Geophysical Research: Planets Vol. 125, No. 8, pp. e2020JE006397, 2020.
  45. Ostdiek, Bryan and Rivero, Ana Diaz and Dvorkin, Cora 2020. Extracting the Subhalo Mass Function from Strong Lens Images with Image Segmentation arXiv preprint arXiv:2009.06639, 2020.

2019 (19 publications)

  1. Austin Smith, Justin Riley, Muneeba Syed, Milan Kupcevic, Paul Edmon, Scott Yockel 2019. Exploring Untrusted Distributed Storage for High Performance Computing acm, 10.1145/3332186.3332224
  2. Phelan Yu, Lawrence W. Cheuk, Ivan Kozyryev, John M. Doyle 2019. A Scalable Quantum Computing Platform Using Symmetric-Top Molecules arXiv:1905.06439 [physics.atom-ph]
  3. Balthazar, B., Rodriguez, V.A. and Yin, X. 2019. Long string scattering in c= 1 string theory Journal of High Energy Physics, 2019(1), p.173.
  4. Schlafly, E.F., Meisner, A.M. and Green, G.M. 2019. The unWISE Catalog: Two Billion Infrared Sources from Five Years of WISE Imaging arXiv preprint arXiv:1901.03337.
  5. Tian, Y. and Kuang, Z. 2019. Why Does Deep Convection Have Different Sensitivities to Temperature Perturbations in the Lower versus Upper Troposphere? Journal of the Atmospheric Sciences, 76(1), pp.27-41.
  6. Hassan, N., Mattheakis, M. and Ding, M. 2019. Sensorless Node Architecture for Events detection in Self-Powered Nanosensor Networks Nano Communication Networks, 19, pp.1-9.
  7. Ma, Q., Xu, S.Y., Shen, H., MacNeill, D., Fatemi, V., Chang, T.R., Valdivia, A.M.M., Wu, S., Du, Z., Hsu, C.H. and Fang, S. 2019. Observation of the nonlinear Hall effect under time-reversal-symmetric conditions Nature, 565(7739), p.337.
  8. Häse, F., Galván, I.F., Aspuru-Guzik, A., Lindh, R. and Vacher, M. 2019. How machine learning can assist the interpretation of ab initio molecular dynamics simulations and conceptual understanding of chemistry Chemical Science
  9. Dagon, K. and Schrag, D.P. 2019. Quantifying the effects of solar geoengineering on vegetation Climatic Change, pp.1-17.
  10. Shultz, A.J. and Sackton, T.B. 2019. Immune genes are hotspots of shared positive selection across birds and mammals eLife, 8, p.e41815.
  11. Moreno, J., Torrey, P., Ellison, S.L., Patton, D.R., Hopkins, P.F., Bueno, M., Hayward, C.C., Narayanan, D., Keres, D., Bluck, A.A. and Hernquist, L. 2019. Interacting galaxies on FIRE-2: The connection between enhanced star formation and interstellar gas conten arXiv preprint arXiv:1902.02305.
  12. Monsalve, R.A., Fialkov, A., Bowman, J.D., Rogers, A.E., Mozdzen, T.J., Cohen, A., Barkana, R. and Mahesh, N. 2019. Results from EDGES High-Band: III. New Constraints on Parameters of the Early Universe arXiv preprint arXiv:1901.10943.
  13. Kreisch, C.D., Cyr-Racine, F.Y. and Doré, O. 2019. The Neutrino Puzzle: Anomalies, Interactions, and Cosmological Tensions arXiv preprint arXiv:1902.00534.
  14. Carr, S., Fang, S., Zhu, Z. and Kaxiras, E. 2019. Minimal model for low-energy electronic states of twisted bilayer graphene arXiv preprint arXiv:1901.03420.
  15. Larson, D., Fang, S., Chen, W., Coulter, J., Torrisi, S. and Carr, S. 2019. Strain-dependent ab-initio tight binding Hamiltonians for T-type transition metal dichalcogenides Bulletin of the American Physical Society.
  16. Larson, D., Fang, S., Chen, W., Coulter, J., Torrisi, S. and Carr, S. 2019. Strain-dependent ab-initio tight binding Hamiltonians for T-type transition metal dichalcogenide Bulletin of the American Physical Society
  17. Lynch, K.S., O'Connell, L.A., Louder, M.I., Balakrishnan, C.N. and Fischer, E.K. 2019. Understanding the Loss of Maternal Care in Avian Brood Parasites Using Preoptic Area Transcriptome Comparisons in Brood Parasitic and Non-parasitic Blackbirds G3: Genes, Genomes, Genetics, pp.g3-200992.
  18. Li, K., Jacob, D.J., Liao, H., Shen, L., Zhang, Q. and Bates, K.H. 2019. Anthropogenic drivers of 2013–2017 trends in summer surface ozone in China Proceedings of the National Academy of Sciences, 116(2), pp.422-427.
  19. Gaynor, S., Fagny, M., Lin, X., Platig, J. and Quackenbush, J. 2019. Connectivity of variants in eQTL networks dictates reproducibility and functionality bioRxiv, p.515551

2018 (75 publications)

  1. Suzgun, M., Belinkov Y., and Shieber, S. M. 2018. On Evaluating the Generalization of LSTM Models in Formal Languages arXiv:1811.01001v1
  2. Mattheakis, M., Tsironis, G.P. and Kaxiras, E. 2018. Electronic Branched Flow in Graphene with Random Potential: Theory and Machine Learning Prediction arXiv preprint arXiv:1801.08217.
  3. de Medeiros, B.A. and Farrell, B.D. 2018. Whole-genome amplification in double-digest RADseq results in adequate libraries but fewer sequenced loci PeerJ, 6, p.e5089
  4. Leja, J., Johnson, B.D., Conroy, C. and van Dokkum, P. 2018. Hot Dust in Panchromatic SED Fitting: Identification of Active Galactic Nuclei and Improved Galaxy Properties The Astrophysical Journal, 854(1), p.62.
  5. Muralidhar, P. and Veller, C. 2018. Sexual antagonism and the instability of environmental sex determination Nature ecology & evolution, p.1.
  6. Mocz, P., Lancaster, L., Fialkov, A. and Becerra, F. 2018. On the Schrodinger-Poisson--Vlasov-Poisson correspondence arXiv preprint arXiv:1801.03507.
  7. Wang, M., Branco, A.T. and Lemos, B. 2018. The Y chromosome modulates splicing and sex-biased intron retention rates in Drosophila Genetics, 208(3), pp.1057-1067.
  8. Hu, Z., Sackton, T.B., Edwards, S.V. and Liu, J.S. 2018. A hierarchical Bayesian model for detecting convergent rate changes of conserved noncoding elements on phylogenetic trees bioRxiv, p.260745.
  9. O'Connor, C.R., Hiebel, F., Chen, W., Kaxiras, E., Madix, R.J. and Friend, C. 2018. Identifying key descriptors in surface binding: Interplay of surface anchoring and intermolecular interactions for carboxylates on Au (110) Chemical Science.
  10. Cloutier, A., Sackton, T.B., Grayson, P., Clamp, M., Baker, A.J. and Edwards, S.V. 2018. Phylogenomic analyses resolve historically contentious relationships within the Palaeognathae in the presence of an empirical anomaly zone bioRxiv, p.262949.
  11. Cloutier, A., Sackton, T.B., Grayson, P., Clamp, M., Baker, A.J. and Edwards, S.V. 2018. Whole-genome analyses resolve the phylogeny of flightless birds (Palaeognathae) in the presence of an empirical anomaly zone bioRxiv, p.262949.
  12. Jinich, A., Sanchez-Lengeling, B., Ren, H., Goldford, J.E., Noor, E., Sanders, J.N., Segre, D. and Aspuru-Guzik, A. 2018. The thermodynamic landscape of carbon redox biochemistry bioRxiv, p.245811.
  13. Lunnan, R., Chornock, R., Berger, E., Jones, D.O., Rest, A., Czekala, I., Dittmann, J., Drout, M.R., Foley, R.J., Fong, W. and Kirshner, R.P. 2018. Hydrogen-poor Superluminous Supernovae from the Pan-STARRS1 Medium Deep Survey The Astrophysical Journal,852(2), p.81.
  14. Jinich, A., Sanchez-Lengeling, B., Ren, H., Harman, R. and Aspuru-Guzik, A. 2018. A mixed quantum chemistry/machine learning approach for the fast and accurate prediction of biochemical redox potentials and its large-scale application to 315,000 redox reactions bioRxiv, p.245357.
  15. Espeland, M., Breinholt, J., Willmott, K.R., Warren, A.D., Vila, R., Toussaint, E.F., Maunsell, S.C., Aduse-Poku, K., Talavera, G., Eastwood, R. and Jarzyna, M.A. 2018. A Comprehensive and Dated Phylogenomic Analysis of Butterflies Current Biology.
  16. Danehkar, A., Nowak, M.A., Lee, J.C., Kriss, G.A., Young, A.J., Hardcastle, M.J., Chakravorty, S., Fang, T., Neilsen, J., Rahoui, F. and Smith, R.K. 2018. The Ultra-Fast Outflow of the Quasar PG 1211+ 143 as viewed by time-averaged Chandra grating spectroscopy The Astrophysical Journal, 853(2), p.165.
  17. Perol, T., Gharbi, M. and Denolle, M. 2018. Convolutional neural network for earthquake detection and location Science Advances,4(2), p.e1700578.
  18. Green, G.M., Schlafly, E.F., Finkbeiner, D., Rix, H.W., Martin, N., Burgett, W., Draper, P.W., Flewelling, H., Hodapp, K., Kaiser, N. and Kudritzki, R.P. 2018. Galactic Reddening in 3D from Stellar Photometry-An Improved Map arXiv preprint arXiv:1801.03555.
  19. Metodiev, E.M. and Thaler, J. 2018. On the Topic of Jets arXiv preprint arXiv:1802.00008.
  20. Sackton, T.B., Grayson, P., Cloutier, A., Hu, Z., Liu, J.S., Wheeler, N.E., Gardner, P.P., Clarke, J.A., Baker, A.J., Clamp, M. and Edwards, S.V. 2018. Convergent regulatory evolution and the origin of flightlessness in palaeognathous birds BioRxiv, p.262584.
  21. Zhong, Q.Y., Gelaye, B., Smoller, J.W., Avillach, P., Cai, T. and Williams, M.A. 2018. Adverse obstetric outcomes during delivery hospitalizations complicated by suicidal behavior among US pregnant women PloS one,13(2), p.e0192943.
  22. Friedman, L.E., Zhong, Q.Y., Gelaye, B., Williams, M.A. and Peterlin, B.L. 2018. Association Between Migraine and Suicidal Behaviors: A Nationwide Study in the USA Headache: The Journal of Head and Face Pain,58(3), pp.371-380.
  23. Kim, S.I., De Medeiros, B.A., Byun, B.K., Lee, S., Kang, J.H., Lee, B. and Farrell, B.D. 2018. West meets east: How do rainforest beetles become circum-Pacific? Evolutionary origin of Callipogon relictus and allied species (Cerambycidae: Prioninae) in the New and Old Worlds Molecular phylogenetics and evolution.
  24. Danehkar, A. 2018. Bi-abundance ionization structure of the Wolf-Rayet planetary nebula PB 8 arXiv preprintarXiv:1801.00892.
  25. You, J.S., Fang, S., Xu, S.Y., Kaxiras, E. and Low, T. 2018. The Berry curvature dipole current in transition metal dichalcogenides family arXiv preprint arXiv:1805.02157.
  26. Hadden, S., Li, G., Payne, M.J. and Holman, M.J. 2018. Chaotic Dynamics of Trans-Neptunian Objects Perturbed by Planet Nine The Astronomical Journal,155(6), p.249.
  27. Carr, S., Fang, S., Jarillo-Herrero, P. and Kaxiras, E. 2018. Pressure dependence of the magic twist angle in graphene superlattices arXiv preprint arXiv:1806.05078.
  28. Patel, E., Besla, G., Mandel, K. and Sohn, S.T. 2018. Estimating the Mass of the Milky Way Using the Ensemble of Classical Satellite Galaxies The Astrophysical Journal,857(2), p.78.
  29. Zhu, Q., Vasiliev, E., Li, Y. and Jing, Y. 2018. Primordial black holes as dark matter: constraints from compact ultra-faint dwarfs Monthly Notices of the Royal Astronomical Society,476(1), pp.2-11.
  30. Lee, A., Green, G.M., Schlafly, E.F., Finkbeiner, D.P., Burgett, W., Chambers, K., Flewelling, H., Hodapp, K., Kaiser, N., Kudritzki, R.P. and Magnier, E. 2018. A Color-locus Method for Mapping RV Using Ensembles of Stars The Astrophysical Journal,854(2), p.79.
  31. Neagu, I.A., Olejarz, J., Freeman, M., Rosenbloom, D.I., Nowak, M.A. and Hill, A.L. 2018. Life cycle synchronization is a viral drug resistance mechanism PLoS computational biology,14(2), p.e1005947.
  32. Jones, D.O., Scolnic, D.M., Riess, A.G., Rest, A., Kirshner, R.P., Berger, E., Kessler, R., Pan, Y.C., Foley, R.J., Chornock, R. and Ortega, C.A. 2018. Measuring Dark Energy Properties with Photometrically Classified Pan-STARRS Supernovae. II. Cosmological Parameters The Astrophysical Journal,857(1), p.51.
  33. Yu, S. and Lemos, B. 2018. The long-range interaction map of ribosomal DNA arrays PLoS genetics,14(3), p.e1007258.
  34. Wang, G., Moffitt, J.R. and Zhuang, X. 2018. Multiplexed imaging of high-density libraries of RNAs with MERFISH and expansion microscopy Scientific reports,8(1), p.4847.
  35. Papamokos, G., Wudarczyk, J., Graf, R., Schollmeyer, D., Baumgarten, M., Müllen, K. and Floudas, G. 2018. Dipolar Relaxation in Functionalized Poly-p-phenylenes Bearing Ultrastrong Dipoles Perpendicular to the Backbone Macromolecules,51(9), pp.3330-3339.
  36. Fraser, K. and Schwartz, M.D. 2018. Jet Charge and Machine Learning arXiv preprint arXiv:1803.08066.
  37. Wong, W., Wenger, E.A., Hartl, D.L. and Wirth, D.F. 2018. Modeling the genetic relatedness of Plasmodium falciparum parasites following meiotic recombination and cotransmission PLoS computational biology,14(1), p.e1005923.
  38. Sundar, V., Gelbwaser-Klimovsky, D. and Aspuru-Guzik, A. 2018. Reproducing Quantum Probability Distributions at the Speed of Classical Dynamics: A New Approach for Developing Force-Field Functors The journal of physical chemistry letters,9(7), pp.1721-1727.
  39. Barutcu, A.R., Maass, P.G., Lewandowski, J.P., Weiner, C.L. and Rinn, J.L. 2018. A TAD boundary is preserved upon deletion of the CTCF-rich Firre locus Nature communications,9(1), p.1444.
  40. Arnold, B.J., Gutmann, M.U., Grad, Y.H., Sheppard, S.K., Corander, J., Lipsitch, M. and Hanage, W.P. 2018. Weak Epistasis May Drive Adaptation in Recombining Bacteria Genetics, pp.genetics-300662.
  41. Scolnic, D.M., Jones, D.O., Rest, A., Pan, Y.C., Chornock, R., Foley, R.J., Huber, M.E., Kessler, R., Narayan, G., Riess, A.G. and Rodney, S. 2018. The Complete Light-curve Sample of Spectroscopically Confirmed SNe Ia from Pan-STARRS1 and Cosmological Constraints from the Combined Pantheon Sample The Astrophysical Journal,859(2), p.101.
  42. Tuite, A.R., Rönn, M.M., Wolf, E.E., Gift, T.L., Chesson, H.W., Berruti, A., Galer, K., Menzies, N.A., Hsu, K., Salomon, J.A. and Tuite, A. 2018. Estimated impact of screening on gonorrhea epidemiology in the United States: insights from a mathematical model Sexually transmitted diseases.
  43. Häse, F., Roch, L.M., Kreisbeck, C. and Aspuru-Guzik, A. 2018. PHOENICS: A universal deep Bayesian optimizer arXiv preprint arXiv:1801.01469.
  44. Espeland, M., Breinholt, J., Willmott, K.R., Warren, A.D., Vila, R., Toussaint, E.F., Maunsell, S.C., Aduse-Poku, K., Talavera, G., Eastwood, R. and Jarzyna, M.A. 2018. A comprehensive and dated phylogenomic analysis of butterflies Current Biology,28(5), pp.770-778.
  45. Kaye, B., Stiehl, O., Foster, P.J., Shelley, M.J., Needleman, D.J. and Fürthauer, S. 2018. Measuring and modeling polymer concentration profiles near spindle boundaries argues that spindle microtubules regulate their own nucleation New Journal of Physics,20(5), p.055012.
  46. Bennett, D.I., Maly, P., Kreisbeck, C., van Grondelle, R. and Aspuru-Guzik, A. 2018. Mechanistic Regimes of Vibronic Transport in a Heterodimer and the Design Principle of Incoherent Vibronic Transport in Phycobiliproteins The journal of physical chemistry letters,9(10), pp.2665-2670.
  47. Bopp, S., Magistrado, P., Wong, W., Schaffner, S.F., Mukherjee, A., Lim, P., Dhorda, M., Amaratunga, C., Woodrow, C.J., Ashley, E.A. and White, N.J. 2018. Plasmepsin II–III copy number accounts for bimodal piperaquine resistance among Cambodian Plasmodium falciparum Nature communications,9(1), p.1769.
  48. Danehkar, A., Nowak, M.A., Lee, J.C., Kriss, G.A., Young, A.J., Hardcastle, M.J., Chakravorty, S., Fang, T., Neilsen, J., Rahoui, F. and Smith, R.K. 2018. The Ultra-Fast Outflow of the Quasar PG 1211+ 143 as Viewed by Time-Averaged Chandra Grating Spectroscopy The Astrophysical Journal,853(2), p.165.
  49. Schlafly, E.F., Green, G.M., Lang, D., Daylan, T., Finkbeiner, D.P., Lee, A., Meisner, A.M., Schlegel, D. and Valdes, F. 2018. The DECam Plane Survey: Optical photometry of two billion objects in the southern Galactic plane The Astrophysical Journal Supplement Series,234(2), p.39.
  50. Sihi, D., Davidson, E.A., Chen, M., Savage, K.E., Richardson, A.D., Keenan, T.F. and Hollinger, D.Y. 2018. Merging a mechanistic enzymatic model of soil heterotrophic respiration into an ecosystem model in two AmeriFlux sites of northeastern USA Agricultural and Forest MeteorologyVolume 252, 15 April 2018, Pages 155-166
  51. Bediako, D.K., Rezaee, M., Yoo, H., Larson, D.T., Zhao, S.F., Taniguchi, T., Watanabe, K., Brower-Thomas, T.L., Kaxiras, E. and Kim, P. 2018. Heterointerface effects in the electrointercalation of van der Waals heterostructures Nature,558(7710), p.425.
  52. Kim, C., Daniels, M., Li, Y., Milbury, K. and Cohen, L. 2018. A Bayesian semiparametric latent variable approach to causal mediation Statistics in medicine,37(7), pp.1149-1161.
  53. Holman, M.J., Payne, M.J., Fraser, W., Lacerda, P., Bannister, M.T., Lackner, M., Chen, Y.T., Lin, H.W., Smith, K.W., Kokotanekova, R. and Young, D. 2018. A dwarf planet class object in the 21: 5 resonance with Neptune The Astrophysical Journal Letters,855(1), p.L6.
  54. O'Connor, C.R., Hiebel, F., Chen, W., Kaxiras, E., Madix, R.J. and Friend, C.M. 2018. Identifying key descriptors in surface binding: interplay of surface anchoring and intermolecular interactions for carboxylates on Au (110) Chemical science,9(15), pp.3759-3766.
  55. Munro, C., Siebert, S., Zapata, F., Howison, M., Serrano, A.D., Church, S.H., Goetz, F.E., Pugh, P.R., Haddock, S.H. and Dunn, C.W. 2018. Improved phylogenetic resolution within Siphonophora (Cnidaria) with implications for trait evolution Molecular Phylogenetics and Evolution.
  56. Cloutier, A., Sackton, T.B., Grayson, P., Edwards, S.V. and Baker, A.J. 2018. First nuclear genome assembly of an extinct moa species, the little bush moa (Anomalopteryx didiformis) bioRxiv, p.262816.
  57. Carr, S., Massatt, D., Luskin, M. and Kaxiras, E. 2018. Duality between atomic configurations and Bloch states in twisted 2D bilayers arXiv preprint arXiv:1803.01242.
  58. Clements, T. and Denolle, M.A. 2018. Tracking Groundwater Levels using the Ambient Seismic Field Geophysical Research Letters. 45:13, 6459-6465
  59. Metodiev, E.M. and Thaler, J. 2018. On the topic of jets arXiv preprint arXiv:1802.00008.
  60. Larson, D.T. and Kaxiras, E. 2018. Raman Spectrum of CrI 3: an ab-initio study.arXiv preprint arXiv:1803.10825.
  61. Maier, M., Mattheakis, M., Kaxiras, E., Luskin, M. and Margetis, D. 2018. Universal behavior of a dispersive Dirac cone in gradient-index plasmonic metamaterials Physical Review B,97(3), p.035307.
  62. Gómez-Bombarelli, R., Wei, J.N., Duvenaud, D., Hernández-Lobato, J.M., Sánchez-Lengeling, B., Sheberla, D., Aguilera-Iparraguirre, J., Hirzel, T.D., Adams, R.P. and Aspuru-Guzik, A. 2018. Automatic chemical design using a data-driven continuous representation of molecules ACS central science,4(2), pp.268-276.
  63. Carr, S., Massatt, D., Torrisi, S.B., Cazeaux, P., Luskin, M. and Kaxiras, E. 2018. Relaxation and Domain Formation in Incommensurate 2D Heterostructures arXiv preprint arXiv:1805.06972.
  64. Lunnan, R., Chornock, R., Berger, E., Jones, D.O., Rest, A., Czekala, I., Dittmann, J., Drout, M.R., Foley, R.J., Fong, W. and Kirshner, R.P. 2018. Hydrogen-poor superluminous supernovae from the Pan-STARRS1 Medium Deep Survey The Astrophysical Journal,852(2), p.81.
  65. Boulais, É., Sawaya, N.P., Veneziano, R., Andreoni, A., Banal, J.L., Kondo, T., Mandal, S., Lin, S., Schlau-Cohen, G.S., Woodbury, N.W. and Yan, H. 2018. Programmed coherent coupling in a synthetic DNA-based excitonic circuit Nature materials,17(2), p.159.
  66. Babcock, H.P. 2018. Multiplane and Spectrally-Resolved Single Molecule Localization Microscopy with Industrial Grade CMOS cameras Scientific reports,8(1), p.1726.
  67. Komiske, P.T., Metodiev, E.M., Nachman, B. and Schwartz, M.D. 2018. Learning to classify from impure samples arXiv preprint arXiv:1801.10158. Info: https://doi.org/10.1103/PhysRevLett.120.241602
  68. Mattheakis, M., Tsironis, G.P. and Kaxiras, E. 2018. Emergence and dynamical properties of stochastic branching in the electronic flows of disordered Dirac solids EPL (Europhysics Letters),122(2), p.27003.
  69. Lau, M., Ellison, A.M., Nguyen, A.D., Penick, C., DeMarco, B., Gotelli, N.J., Sanders, N., Dunn, R. and Cahan, S.H. 2018. Expanded view of the ecological genomics of ant responses to climate change bioRxiv, p.302679.
  70. Zhang, Y., Kim, S., Feng, G., Wang, Y., Liu, L., Ceder, G. and Li, X. 2018. The Interaction between Cu and Fe in P2-Type NaxTMO2 Cathodes for Advanced Battery Performance Journal of The Electrochemical Society,165(7), pp.A1184-A1192.
  71. Puri, A.W., Mevers, E., Ramadhar, T.R., Petras, D., Liu, D., Piel, J., Dorrestein, P.C., Greenberg, E.P., Lidstrom, M.E. and Clardy, J. 2018. Tundrenone: An Atypical Secondary Metabolite from Bacteria with Highly Restricted Primary Metabolism Journal of the American Chemical Society,140(6), pp.2002-2006.
  72. Gu, M., Conroy, C. and Brammer, G. 2018. Coordinated Assembly of Brightest Cluster Galaxies arXiv preprint arXiv:1805.04520.
  73. Liu, S.H., Bobb, J.F., Claus Henn, B., Schnaas, L., Tellez‐Rojo, M.M., Gennings, C., Arora, M., Wright, R.O., Coull, B.A. and Wand, M.P. 2018. Modeling the health effects of time‐varying complex environmental mixtures: Mean field variational Bayes for lagged kernel machine regression Environmetrics, p.e2504.
  74. Mattheakis, M., Tsironis, G. and Kaxiras, E. 2018. Electronic Branched Flow in Graphene and Dirac Materials Bulletin of the American Physical Society.
  75. Eastham, Sebastian D and Long, Michael S and Keller, Christoph A and Lundgren, Elizabeth and Yantosca, Robert M and Zhuang, Jiawei and Li, Chi and Lee, Colin J and Yannetti, Matthew and Auer, Benjamin M and others 2018. GEOS-Chem High Performance (GCHP v11-02c): a next-generation implementation of the GEOS-Chem chemical transport model for massively parallel applications Geoscientific Model Development Vol. 11, No. 7, pp. 2941--2953, 2018.

2017 (59 publications)

  1. Mehr, S. A., Kotler, J., Howard, R. M., Haig, D., & Krasnow, M. M. 2017. Genomic imprinting is implicated in the psychology of music Psychological Science, 28(10), 1455–1467
  2. Di, Q., Rowland, S., Koutrakis, P. and Schwartz, J. 2017. A hybrid model for spatially and temporally resolved ozone exposures in the continental United States Journal of the Air & Waste Management Association, 67(1), pp.39-52.
  3. Levin, B.J., Huang, Y.Y., Peck, S.C., Wei, Y., Martínez-del Campo, A., Marks, J.A., Franzosa, E.A., Huttenhower, C. and Balskus, E.P. 2017. A prominent glycyl radical enzyme in human gut microbiomes metabolizes trans-4-hydroxy-l-proline Science355:eaai8386.
  4. Andam, C.P., Mitchell, P.K., Callendrello, A., Chang, Q., Corander, J., Chaguza, C., McGee, L., Beall, B.W. and Hanage, W.P. 2017. Genomic epidemiology of penicillin non-susceptible pneumococci with non-vaccine serotypes causing invasive disease in the USA Journal of Clinical Microbiology, pp.JCM-02453.
  5. Zhou, Q., Sun, X., Xia, X., Fan, Z., Luo, Z., Zhao, S., Shakhnovich, E. and Liang, H. 2017. Exploring the Mutational Robustness of Nucleic Acids by Searching Genotype Neighborhoods in Sequence Space The journal of physical chemistry letters,8(2), pp.407-414.
  6. Jones, D.O., Scolnic, D.M., Riess, A.G., Kessler, R., Rest, A., Kirshner, R.P., Berger, E., Ortega, C.A., Foley, R.J., Chornock, R. and Challis, P.J. 2017. Measuring the Properties of Dark Energy with Photometrically Classified Pan-STARRS Supernovae. I. Systematic Uncertainty from Core-collapse Supernova Contamination The Astrophysical Journal,843(6), p.23pp.
  7. Mocz, P., Vogelsberger, M., Robles, V., Zavala, J., Boylan-Kolchin, M. and Hernquist, L. 2017. Galaxy Formation with BECDM: I. Turbulence and relaxation of idealised haloes arXiv preprint arXiv:1705.05845.
  8. Mattheakis, M., Tsironis, G.P. and Kaxiras, E. 2017. Graphene and active metamaterials: theoretical methods and physical properties arXiv preprint arXiv:1704.01912.
  9. Tanaka, H. and Brenner, M.P. 2017. Hot particles attract in a cold bath Physical Review Fluids,2(4), p.043103.
  10. Chotibut, T., Nelson, D.R. and Succi, S. 2017. Striated populations in disordered environments with advection Physica A: Statistical Mechanics and its Applications,465, pp.500-514.
  11. Bendesky, A., Kwon, Y.M., Lassance, J.M., Lewarch, C.L., Yao, S., Peterson, B.K., He, M.X., Dulac, C. and Hoekstra, H.E. 2017. The genetic basis of parental care evolution in monogamous mice Nature,544(7651), pp.434-439.
  12. Torrey, P., Wellons, S., Ma, C.P., Hopkins, P.F. and Vogelsberger, M. 2017. Forward and backward galaxy evolution in comoving cumulative number density space Monthly Notices of the Royal Astronomical Society,467(4), pp.4872-4885.
  13. Andam, C.P., Mitchell, P.K., Callendrello, A., Chang, Q., Corander, J., Chaguza, C., McGee, L., Beall, B.W. and Hanage, W.P. 2017. Genomic Epidemiology of Penicillin-Nonsusceptible Pneumococci with Nonvaccine Serotypes Causing Invasive Disease in the United States Journal of clinical microbiology,55(4), pp.1104-1115.
  14. Speagle, J.S. and Eisenstein, D.J. 2017. Deriving photometric redshifts using fuzzy archetypes and self-organizing maps–II. Implementation Monthly Notices of the Royal Astronomical Society,469(1), pp.1205-1224.
  15. Kingsley, E.P., Kozak, K.M., Pfeifer, S.P., Yang, D.S. and Hoekstra, H.E. 2017. The ultimate and proximate mechanisms driving the evolution of long tails in forest deer mice Evolution,71(2), pp.261-273.
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  18. Safarzadeh, M., Hayward, C.C. and Ferguson, H.C. 2017. The IRX–β Relation: Insights from Simulations The Astrophysical Journal,840(1), p.15.
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  20. Wang, M. and Lemos, B. 2017. Genetic context and proliferation determine contrasting patterns of copy number amplification and loss for 5S and 45S ribosomal DNA arrays in cancer bioRxiv, p.154120.
  21. Hitchings, M.D.T., Grais, R.F. and Lipsitch, M. 2017. Using simulation to aid trial design: Ring-vaccination trials PLoS neglected tropical diseases,11(3), p.e0005470.
  22. Mostame, S., Huh, J., Kreisbeck, C., Kerman, A.J., Fujita, T., Eisfeld, A. and Aspuru-Guzik, A. 2017. Emulation of complex open quantum systems using superconducting qubits Quantum Information Processing,16(2), p.44.
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  25. DeFelippis, D., Genel, S., Bryan, G.L. and Fall, S.M. 2017. The Impact of Galactic Winds on the Angular Momentum of Disk Galaxies in the Illustris Simulation The Astrophysical Journal,841(1), p.16.
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  27. Portillo, S.K., Lee, B.C., Daylan, T. and Finkbeiner, D.P. 2017. Improved Point Source Detection in Crowded Fields using Probabilistic Cataloging arXiv preprint arXiv:1703.01303.
  28. Liu, X. 2017. Deep Recurrent Neural Network for Protein Function Prediction from Sequence arXiv preprint arXiv:1701.08318.
  29. Schlauch, D., Fier, H. and Lange, C. 2017. Identification of genetic outliers due to sub-structure and cryptic relationships Bioinformatics, p.btx109.
  30. Todd, J.G., Kain, J.S. and de Bivort, B.L. 2017. Systematic exploration of unsupervised methods for mapping behavior Physical Biology,14(1), p.015002.
  31. Baker, C.C., Martins, D.J., Pelaez, J.N., Billen, J.P., Pringle, A., Frederickson, M.E. and Pierce, N.E. 2017. Distinctive fungal communities in an obligate African ant-plant mutualism. In Proc. R. Soc. B(Vol. 284, No. 1850, p. 20162501). The Royal Society.
  32. Kaye, B., Foster, P.J., Yoo, T.Y. and Needleman, D.J. 2017. Developing and testing a Bayesian analysis of fluorescence lifetime measurements PloS one,12(1), p.e0169337.
  33. Bitran, A., Chiang, W.Y., Levine, E. and Prentiss, M. 2017. Mechanisms of fast and stringent search in homologous pairing of double-stranded DNA PLoS computational biology,13(3), p.e1005421.
  34. Reiter, J.G., Makohon-Moore, A.P., Gerold, J.M., Bozic, I., Chatterjee, K., Iacobuzio-Donahue, C.A., Vogelstein, B. and Nowak, M.A. 2017. Reconstructing metastatic seeding patterns of human cancers Nature Communications,8.
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  36. Valleau, S., Studer, R.A., Häse, F., Kreisbeck, C., Saer, R.G., Blankenship, R.E., Shakhnovich, E.I. and Aspuru-Guzik, A. 2017. Absence of selection for quantum coherence in the Fenna-Matthews-Olson complex: a combined evolutionary and excitonic study arXiv preprint arXiv:1705.01537.
  37. Blau, S.M., Bennett, D.I., Kreisbeck, C., Scholes, G.D. and Aspuru-Guzik, A. 2017. Local protein solvation drives direct down-conversion in phycobiliprotein PC645 via incoherent vibronic transport arXiv preprint arXiv:1704.05449.
  38. Di, Q., Wang, Y., Zanobetti, A., Wang, Y., Koutrakis, P., Choirat, C., Dominici, F. and Schwartz, J.D. 2017. Air Pollution and Mortality in the Medicare Population New England Journal of Medicine,376(26), pp.2513-2522.
  39. Zhu, Q., Smith, B. and Hernquist, L. 2017. Gas Cooling in Hydrodynamic Simulations with An Exact Time Integration Scheme Monthly Notices of the Royal Astronomical Society.
  40. Sackton, T.B., Lazzaro, B.P., and Clark, A.G. 2017. Rapid expansion of immune-related gene families in the house fly, Musca domestica Molecular biology and evolution34 (4): 857.
  41. Valagiannopoulos, C.A., Mattheakis, M., Shirodkar, S.N. and Kaxiras, E. 2017. Manipulating polarized light with a planar slab of Black Phosphorus arXiv preprint arXiv:1703.06383.
  42. Federico Marinacci, Mark Vogelsberger, Rüdiger Pakmor, Paul Torrey, Volker Springel, Lars Hernquist, Dylan Nelson, Rainer Weinberger, Annalisa Pillepich, Jill Naiman, Shy Genel. 2017. First results from the IllustrisTNG simulations: radio haloes and magnetic fields arXiv preprint arXiv:1707.03396v1
  43. Volker Springel, Rüdiger Pakmor, Annalisa Pillepich, Rainer Weinberger, Dylan Nelson, Lars Hernquist, Mark Vogelsberger, Shy Genel, Paul Torrey, Federico Marinacci, Jill Naiman. 2017. First results from the IllustrisTNG simulations: matter and galaxy clustering arXiv preprintarXiv:1707.03397v1
  44. Perol, T., Gharbi, M. and Denolle, M. 2017. Convolutional Neural Network for Earthquake Detection and Location arXiv preprintarXiv:1702.02073.Vancouver
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  47. Haehn, D., Hoffer, J., Matejek, B., Suissa-Peleg, A., Al-Awami, A.K., Kamentsky, L., Gonda, F., Meng, E., Zhang, W., Schalek, R. and Wilson, A. 2017. August. Scalable Interactive Visualization for Connectomics Informatics(Vol. 4, No. 3, p. 29). Multidisciplinary Digital Publishing Institute.
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2016 (54 publications)

  1. Cheron, N., Serohijos, A.W.R., Choi, J.M., and Shakhnovich, E. I. 2016. Evolutionary dynamics of viral escape under antibodies stress: A biophysical model. Protein Science, 25, pp.1332.
  2. Reis, S A, Ghosh, B, Hendricks, J A, Szantai-Kis, D M, Tork, L, Ross, K N, Lamb, J, Read-Button, W, Zheng, B, Wang, H, Salthouse, C, Haggarty, S J, and Mazitschek, R. 2016. Light-controlled modulation of gene expression by chemical optoepigenetic probes Nature Chemical BiologyPublished online 14 March 2016.
  3. Bogiatzis, P., Ishii, M., and Davis, T. A. 2016. Toward using direct methods in seismic tomography: Computation of the full resolution matrix using high performance computing and sparse QR factorization Geophys. J. Int.first published online February 8, 2016.
  4. Jakob Wudarczyk, Dr. George Papamokos, Vasilis Margaritis, Dr. Dieter Schollmeyer, Dr. Felix Hinkel, Prof. Dr. Martin Baumgarten, Prof. Dr. George Floudas, Prof. Dr. Klaus Müllen 2016. Hexasubstituted Benzenes with Ultrastrong Dipole Moments Angewandte Chemie Int.first published February 2, 2016.
  5. Fernández, R., Edgecombe, G.D. & Giribet, G. 2016. Exploring phylogenetic relationships within Myriapoda and the effects of matrix composition and occupancy on phylogenomic reconstruction Systematic Biology, in press.
  6. Phoebe M. R. DeVries, Plamen G. Krastev, and Brendan J. Meade 2016. Geodetically constrained models of viscoelastic stress transferand earthquake triggering along the North Anatolian fault Geochemistry, Geophysics, Geosystems/AGUfirst published June 20, 2016.
  7. Paul Torrey, Sarah Wellons, Chung-Pei Ma, Philip F. Hopkins, and Mark Vogelsberger 2016. Forward and backward galaxy evolution in comoving number density space Monthly Notices of the Royal Astronomical Societyfirst published June 24, 2016.
  8. Alexander Mathis, Dan Rokni, Vikrant Kapoor, Matthias Bethge, Venkatesh N. Murthy 2016. Reading Out Olfactory Receptors: Feedforward Circuits Detect Odors in Mixtures without Demixing Neuronfirst published September, 7, 2016.
  9. Fujita, T., Atahan-Evrenk, S., Sawaya, N.P. and Aspuru-Guzik, A. 2016. Coherent Dynamics of Mixed Frenkel and Charge-Transfer Excitons in Dinaphtho [2, 3-b: 2′ 3′-f] thieno [3, 2-b]-thiophene Thin Films: The Importance of Hole Delocalization The journal of physical chemistry letters,7(7), pp.1374-1380.
  10. Park, H.J., So, M.C., Gosztola, D., Wiederrecht, G.P., Emery, J.D., Martinson, A.B., Er, S., Wilmer, C.E., Vermeulen, N.A., Aspuru-Guzik, A. and Stoddart, J.F. 2016. Layer-by-Layer Assembled Films of Perylene Diimide-and Squaraine-Containing Metal–Organic Framework-like Materials: Solar Energy Capture and Directional Energy Transfer ACS Applied Materials & Interfaces,8(38), pp.24983-24988.
  11. Wei, J.N., Duvenaud, D. and Aspuru-Guzik, A. 2016. Neural networks for the prediction of organic chemistry reactions ACS Central Science,2(10), pp.725-732.
  12. Gelbwaser-Klimovsky, D., Saikin, S.K., Goldsmith, R.H. and Aspuru-Guzik, A. 2016. Optical Spectra of p-Doped PEDOT Nanoaggregates Provide Insight into the Material Disorder ACS Energy Letters,1(6), pp.1100-1105.
  13. Pyzer-Knapp, E.O., Simm, G.N. and Guzik, A.A. 2016. A Bayesian approach to calibrating high-throughput virtual screening results and application to organic photovoltaic materials Materials Horizons,3(3), pp.226-233.
  14. Blood-Forsythe, M.A., Markovich, T., DiStasio, R.A., Car, R. and Aspuru-Guzik, A. 2016. Analytical nuclear gradients for the range-separated many-body dispersion model of noncovalent interactions Chemical Science,7(3), pp.1712-1728.
  15. Häse, F., Valleau, S., Pyzer-Knapp, E. and Aspuru-Guzik, A. 2016. Machine learning exciton dynamics Chemical Science.
  16. Lin, K., Gómez-Bombarelli, R., Beh, E.S., Tong, L., Chen, Q., Valle, A., Aspuru-Guzik, A., Aziz, M.J. and Gordon, R.G. 2016. A redox-flow battery with an alloxazine-based organic electrolyte Nature Energy,1, p.16102.
  17. Gómez-Bombarelli, R., Aguilera-Iparraguirre, J., Hirzel, T.D., Duvenaud, D., Maclaurin, D., Blood-Forsythe, M.A., Chae, H.S., Einzinger, M., Ha, D.G., Wu, T. and Markopoulos, G. 2016. Design of efficient molecular organic light-emitting diodes by a high-throughput virtual screening and experimental approach Nature Materials,15(10), pp.1120-1127.
  18. Lopez, S.A., Pyzer-Knapp, E.O., Simm, G.N., Lutzow, T., Li, K., Seress, L.R., Hachmann, J. and Aspuru-Guzik, A. 2016. The Harvard organic photovoltaic dataset Scientific Data,3.
  19. Ma, D., and Z. Kuang. 2016. A mechanism‐denial study on the Madden‐Julian Oscillation with reduced interference from mean state changes Geophysical Research Letters43.6 (2016): 2989-2997.
  20. Hassanzadeh, P. and Kuang, Z. 2016. The linear response function of an idealized atmosphere. Part I: Construction using Green’s functions and applications Journal of the Atmospheric Sciences,73(9), pp.3423-3439.
  21. Hassanzadeh, P. and Kuang, Z. 2016. The Linear Response Function of an Idealized Atmosphere. Part II: Implications for the Practical Use of the Fluctuation–Dissipation Theorem and the Role of Operator’s Nonnormality Journal of the Atmospheric Sciences,73(9), pp.3441-3452.
  22. Ma, D., Hassanzadeh, P. and Kuang, Z. 2016. Quantifying the eddy-jet feedback strength of the annular mode in an idealized GCM and the reanalysis data Journal of the Atmospheric Sciences, (2016).
  23. Moore, M., Blossey, P.N., Muhlbauer, A. and Kuang, Z. 2016. Microphysical controls on the isotopic composition of wintertime orographic precipitation Journal of Geophysical Research: Atmospheres, 121(12), pp.7235-7253.
  24. Nie, J., Kuang, Z., Jacob, D.J. and Guo, J. 2016. Representing effects of aqueous phase reactions in shallow cumuli in global models Journal of Geophysical Research: Atmospheres, 121(10), pp.5769-5787.
  25. Singh, M.S. and Kuang, Z. 2016. Exploring the role of eddy momentum fluxes in determining the characteristics of the equinoctial Hadley circulation: Fixed-SST simulations Journal of the Atmospheric Sciences, 73(6), pp.2427-2444.
  26. Singh, M.S., Kuang, Z. and Tian, Y. 2016. Eddy influences on the strength of the Hadley circulation: dynamic and thermodynamic perspectives Journal of the Atmospheric Sciences, (2016).
  27. Tian, Y. and Kuang, Z. 2016. Dependence of entrainment in shallow cumulus convection on vertical velocity and distance to cloud edge Geophysical Research Letters, 43(8), pp.4056-4065.
  28. Torri, G. and Kuang, Z. 2016. Rain evaporation and moist patches in tropical boundary layers Geophysical Research Letters, 43(18), pp.9895-9902.
  29. Torri, G. and Kuang, Z. 2016. A Lagrangian study of precipitation-driven downdrafts Journal of the Atmospheric Sciences, 73(2), pp.839-854.
  30. Kannan, R., Vogelsberger, M., Stinson, G.S., Hennawi, J.F., Marinacci, F., Springel, V. and Maccio, A.V. 2016. Galaxy formation with local photoionization feedback–II. Effect of X-ray emission from binaries and hot gas Monthly Notices of the Royal Astronomical Society, 458(3), pp.2516-2529.
  31. Griffen, B.F., Ji, A.P., Dooley, G.A., Gómez, F.A., Vogelsberger, M., O’Shea, B.W. and Frebel, A. 2016. The Caterpillar Project: A Large Suite of Milky Way Sized Halos The Astrophysical Journal, 818(1), p.10.
  32. Popa, C., Naoz, S., Marinacci, F. and Vogelsberger, M. 2016. Gas-rich and gas-poor structures through the stream velocity effect Monthly Notices of the Royal Astronomical Society, 460(2), pp.1625-1639.
  33. Vogelsberger, M., Zavala, J., Cyr-Racine, F.Y., Pfrommer, C., Bringmann, T. and Sigurdson, K. 2016. ETHOS–an effective theory of structure formation: dark matter physics as a possible explanation of the small-scale CDM problems Monthly Notices of the Royal Astronomical Society, 460(2), pp.1399-1416.
  34. Nelson, D., Genel, S., Pillepich, A., Vogelsberger, M., Springel, V. and Hernquist, L. 2016. Zooming in on accretion–I. The structure of halo gas Monthly Notices of the Royal Astronomical Society, 460(3), pp.2881-2904.
  35. Taylor, C., Boylan-Kolchin, M., Torrey, P., Vogelsberger, M. and Hernquist, L. 2016. The mass profile of the Milky Way to the virial radius from the Illustris simulation Monthly Notices of the Royal Astronomical Society, 461(4), pp.3483-3493.
  36. Nierenberg, A.M., Treu, T., Menci, N., Lu, Y., Torrey, P. and Vogelsberger, M. 2016. The missing satellite problem in 3D Monthly Notices of the Royal Astronomical Society, 462(4), pp.4473-4481.Vancouver
  37. Mocz, P., Pakmor, R., Springel, V., Vogelsberger, M., Marinacci, F. and Hernquist, L. 2016. A moving mesh unstaggered constrained transport scheme for magnetohydrodynamics Monthly Notices of the Royal Astronomical Society, 463(1), pp.477-488.
  38. McKinnon, R., Torrey, P. and Vogelsberger, M. 2016. Dust formation in Milky Way-like galaxies Monthly Notices of the Royal Astronomical Society, 457(4), pp.3775-3800.
  39. Kannan, R., Springel, V., Pakmor, R., Marinacci, F. and Vogelsberger, M. 2016. Accurately simulating anisotropic thermal conduction on a moving mesh Monthly Notices of the Royal Astronomical Society, 458(1), pp.410-424.
  40. Rodriguez-Gomez, V., Pillepich, A., Sales, L.V., Genel, S., Vogelsberger, M., Zhu, Q., Wellons, S., Nelson, D., Torrey, P., Springel, V. and Ma, C.P. 2016. The stellar mass assembly of galaxies in the Illustris simulation: growth by mergers and the spatial distribution of accreted stars Monthly Notices of the Royal Astronomical Society, 458(3), pp.2371-2390.
  41. Rodriguez-Gomez, V., Sales, L.V., Genel, S., Pillepich, A., Zjupa, J., Nelson, D., Griffen, B., Torrey, P., Snyder, G.F., Vogelsberger, M. and others 2016. The role of mergers and halo spin in shaping galaxy morphology arXiv preprintarXiv:1609.09498.
  42. Bray, A.D. , Pillepich, A., Sales, L. V., Zhu, E., Genel, S., Rodriguez-Gomez, V., Torrey, P. Nelson, D., Vogelsberger, M., Springel, V. and others 2016. Modelling galactic conformity with the colour--halo age relation in the Illustris simulation Monthly Notices of the Royal Astronomical Society, 455, pp.185--198.
  43. Blecha, L., Sijacki, D., Kelley, L.Z., Torrey, P., Vogelsberger, M., Nelson, D., Springel, V., Snyder, G. and Hernquist, L. 2016. Recoiling black holes: prospects for detection and implications of spin alignment Monthly Notices of the Royal Astronomical Society, 456, pp.961--989.
  44. Mistani, P.A., Sales, L.V., Pillepich, A., Sanchez-Janssen, R., Vogelsberger, M., Nelson, D., Rodriguez-Gomez, V. , Torrey, P. and Hernquist, L. 2016. On the assembly of dwarf galaxies in clusters and their efficient formation of globular clusters Monthly Notices of the Royal Astronomical Society, 455, pp.2323--2336.
  45. Leja, J., Johnson, Benjamin D., Conroy, C., van Dokkum, P.G. and Byler, N. 2016. Deriving Physical Properties from Broadband Photometry with Prospector: Description of the Model and a Demonstration of its Accuracy Using 129 Galaxies in the Local Universe arXiv preprintarXiv:1609.09073
  46. Rix, Hans-Walter, Ting, Yuan-Sen, Conroy, C. and Hogg, David W. 2016. Constructing Polynomial Spectral Models for Stars The Astrophysical Journal Letters, 826, pp.L25.
  47. Gu, M., Conroy, C. and Behroozi, P. 2016. Hierarchical Galaxy Growth and Scatter in the Stellar Mass -- Halo Mass Relation The Astrophysical Journal, 833, pp.2.
  48. Ting, Yuan-Sen, Conroy, C. and Rix, Hans-Walter 2016. Accelerated Fitting of Stellar Spectra The Astrophysical Journal, 826, pp.83.
  49. Choi, J., Dotter, A., Conroy, C., Cantiello, M., Paxton, B. and Johnson, B.D. 2016. Mesa Isochrones and Stellar Tracks (MIST). I. Solar-scaled Models The Astrophysical Journal, 823, pp.102.
  50. Lemer, S., Gonzalez, V.L., Bieler, R. and Giribet, G. 2016. Cementing mussels to oysters in the pteriomorphian tree: a phylogenomic approach Proc. R. Soc. B, 283, pp.20160857.
  51. Komiske, P.T., Metodiev, E.M. and Schwartz, M.D. 2016. Deep learning in color: towards automated quark/gluon jet discrimination Journal of High Energy Physics2017:110
  52. Di, Q., Kloog, I., Koutrakis, P., Lyapustin, A., Wang, Y. and Schwartz, J. 2016. Assessing PM2. 5 exposures with high spatiotemporal resolution across the continental United States Environmental science & technology, 50(9), pp.4712-4721.
  53. Ishihara, K., Korolev, K.S. and Mitchison, T.J. 2016. Physical basis of large microtubule aster growth eLife,5, p.e19145.
  54. Cheron, N., Serohijos, A.W.R., Choi, J.M., and Shakhnovich, E. I. 2016. Evolutionary dynamics of viral escape under antibodies stress: A biophysical model Protein Science, 25, pp.1332.

2015 (61 publications)

  1. Muñoz, D. J., Kratter, K., Vogelsberger, M., Hernquist, L., & Springel, V. 2015. Stellar orbit evolution in close circumstellar disc encounters Monthly Notices of the Royal Astronomical Society,446(2), 2010-2029.
  2. Mckenna, D. D., Farrell, B. D., Caterino, M. S., Farnum, C. W., Hawks, D. C., Maddison, D. R., ... & Thayer, M. K. 2015. Phylogeny and evolution of Staphyliniformia and Scarabaeiformia: forest litter as a stepping stone for diversification of nonphytophagous beetles Systematic Entomology,40(1), 35-60.
  3. Kolesov, G., Vinichenko, D., Tritsaris, G. A., Friend, C. M., & Kaxiras, E. 2015. Anatomy of the Photo-chemical Reaction: Excited State Dynamics Reveals CH Acidity Mechanism of Methoxy Photo-oxidation on Titania The Journal of Physical Chemistry Letters.
  4. Boyle, J. H., Kaliszewska, Z. A., Espeland, M., Suderman, T. R., Fleming, J., Heath, A., & Pierce, N. E. 2015. Phylogeny of the Aphnaeinae: myrmecophilous African butterflies with carnivorous and herbivorous life histories Systematic Entomology,40(1), 169-182.
  5. Zimmerman, K., Levitis, D., Addicott, E., & Pringle, A. 2015. Selection of Pairings Reaching Evenly Across the Data (SPREAD): A simple algorithm to design maximally informative fully crossed mating experiments Heredity2015/09/30/online
  6. Zhou, Q., Xia, X., Luo, Z., Liang, H. and Eugene Shakhnovich, E. 2015. Searching the Sequence Space for Potent Aptamers Using SELEX in Silico. J. Chem. Theory Comput., Article ASAP DOI: 10.1021/acs.jctc.5b00707
  7. Yang, S., Santillana, M., & Kou, S. C. 2015. ARGO: a model for accurate estimation of influenza epidemics using Google search data arXiv preprint arXiv:1505.00864.
  8. Wordsworth, R. D., Kerber, L., Pierrehumbert, R. T., Forget, F., & Head, J. W. 2015. Comparison of “warm and wet” and “cold and icy” scenarios for early Mars in a 3‐D climate model Journal of Geophysical Research: Planets, 120(6), 1201-1219.
  9. Wallace EWJ, Kear-Scott JL, Pilipenko EV, Schwartz MH, Laskowski PR, Rojek AE, Katanski CD, Riback JA, Dion MF, Franks AM, Airoldi EM, Pan T, Budnik BA, and Drummond DA. 2015. Reversible, specific, active aggregates of endogenous proteins assemble upon heat stress Cell162(6).
  10. Thompson, T. B., Plesch, A., Shaw, J. H., & Meade, B. J. 2015. Rapid slip‐deficit rates at the eastern margin of the Tibetan Plateau prior to the 2008 Mw 7.9 Wenchuan earthquake Geophysical Research Letters,42(6), 1677-1684.
  11. Snoek, J., Rippel, O., Swersky, K., Kiros, R., Satish, N., Sundaram, N., ... & Adams, R. P. 2015. Scalable Bayesian Optimization Using Deep Neural Networks arXiv preprint arXiv:1502.05700.
  12. SINGH, M. S., & KUANG, Z. 2015. Revisiting the role of eddies in determining the strength of the equinoctial Hadley circulation Journal of the Atmospheric Sciences73 (6): 2427–2444
  13. Shechner, D. M., Hacisuleyman, E., Younger, S. T., & Rinn, J. L. 2015. Multiplexable, locus-specific targeting of long RNAs with CRISPR-Display Nature methods.
  14. Sharma, P., Fernández, R., González Santillán, E., Monod, L. 2015. Phylogenomic resolution of scorpions reveals multilevel discordance with morphological phylogenetic signal Proceedings of the Royal Society B: Biological Sciences282: 20142953.
  15. Shapiro, Lori R., et al. 2015. Horizontal gene acquisitions, mobile element proliferation, and genome decay in the host-restricted plant pathogen Erwinia tracheiphila Genome Biology and Evolution(accepted)
  16. Shapiro, L. R., Scully, E. D., Roberts, D., Straub, T. J., Geib, S. M., Park, J., ... & Zhaxybayeva, O. 2015. Draft genome sequence of Erwinia tracheiphila, an economically important bacterial pathogen of cucurbits Genome announcements,(3), e00482-15.
  17. Sawaya, N. P., Huh, J., Fujita, T., Saikin, S. K., & Aspuru-Guzik, A. 2015. Fast Delocalization Leads To Robust Long-Range Excitonic Transfer in a Large Quantum Chlorosome Model Nano letters,15(3), 1722-1729.
  18. Sanders, J. N., Andrade, X., & Aspuru-Guzik, A. 2015. Compressed Sensing for the Fast Computation of Matrices: Application to Molecular Vibrations ACS Central Science.
  19. Sales, L. V., Vogelsberger, M., Genel, S., Torrey, P., Nelson, D., Rodriguez-Gomez, V., ... & Hernquist, L. 2015. The colours of satellite galaxies in the Illustris simulation Monthly Notices of the Royal Astronomical Society: Letters,447(1), L6-L10.
  20. Pyzer-Knapp, E. O., Simm, G. N., & Aspuru-Guzik, A. 2015. A Bayesian Approach to Calibrating High-Throughput Virtual Screening Results and Application to Organic Photovoltaic Materials arXiv preprintarXiv:1510.00388.
  21. Pyzer‐Knapp, E. O., Li, K., & Aspuru‐Guzik, A. 2015. Learning from the Harvard Clean Energy Project: The Use of Neural Networks to Accelerate Materials Discovery Advanced Functional Materials,25(41), 6495-6502.
  22. Prescott, J., Setiawan, V. W., Wentzensen, N., Schumacher, F., Yu, H., Delahanty, R., ... & Friedenreich, C. 2015. Body Mass Index Genetic Risk Score and Endometrial Cancer Risk PloS one,10(11).
  23. Parker, A. H. 2015. The intrinsic Neptune Trojan orbit distribution: Implications for the primordial disk and planet migration Icarus,247, 112-125.
  24. Novitsky, V., Moyo, S., Lei, Q., DeGruttola, V., & Essex, M. 2015. Importance of Viral Sequence Length and Number of Variable and Informative Sites in Analysis of HIV Clustering AIDS research and human retroviruses,31(5), 531-542.
  25. Moreno, J., Torrey, P., Ellison, S. L., Patton, D. R., Bluck, A. F., Bansal, G., & Hernquist, L. 2015. Mapping galaxy encounters in numerical simulations: The spatial extent of induced star formation arXiv preprint arXiv:1501.03573.
  26. Menegas, W., Bergan, J. F.,Ogawa, S. K., Isogai, Y., Venkataraju, K. U., Osten, P., Uchida, N., Mitsuko Watabe-Uchida, M. 2015. Dopamine neurons projecting to the posterior striatum form an anatomically distinct subclass eLife2015;10.7554/eLife.10032
  27. Malone, J. H. 2015. Balancing copy number in ribosomal DNA Proceedings of the National Academy of Sciences,112(9), 2635-2636.
  28. Lemon, C. M., Halbach, R. L., Huynh, M., & Nocera, D. G. 2015. Photophysical Properties of β-Substituted Free-Base Corroles Inorganic chemistry,54(6), 2713-2725.
  29. Lavrentovich, M. O. 2015. Critical Fitness Collapse in Three-Dimensional Spatial Population Genetics arXiv preprint arXiv:1504.00748.
  30. Laumer, C. E., Hejnol, A., & Giribet, G. 2015. Nuclear genomic signals of the ‘microturbellarian’roots of platyhelminth evolutionary innovation eLife,4, e05503.
  31. Kwan, E. E., & Liu, R. Y. 2015. Enhancing NMR Prediction for Organic Compounds Using Molecular Dynamics Journal of Chemical Theory and Computation.doi:10.1021/acs.jctc.5b00856.
  32. Kumar, S., Gezari, S., Heinis, S., Chornock, R., Berger, E., Rest, A., ... & Wainscoat, R. J. 2015. Selection of Burst-like Transients and Stochastic Variables Using Multi-Band Image Differencing in the Pan-STARRS1 Medium-Deep Survey arXiv preprint arXiv:1501.01314.
  33. Kreisbeck, C., & Aspuru-Guzik, A. 2015. Efficiency of energy funneling in the photosystem II supercomplex of higher plants arXiv preprint arXiv:1502.02657.
  34. Koo, B. J., Huynh, M., Halbach, R. L., Stubbe, J., & Nocera, D. G. 2015. Modulation of Phenol Oxidation in Cofacial Dyads Journal of the American Chemical Society.
  35. Kim, S. I., & Farrell, B. D. 2015. Phylogeny of world stag beetles (Coleoptera: Lucanidae) reveals a Gondwanan origin of Darwin’s stag beetle Molecular phylogenetics and evolution,86, 35-48.
  36. Julio D Perez, Nimrod D Rubinstein, Daniel E Fernandez, Stephen W Santoro, Leigh A Needleman, Olivia Ho-Shing, John J Choi, Mariela Zirlinger, Shau-Kwaun Chen, Jun S Liu, Catherine Dulac. 2015. Quantitative and functional interrogation of parent-of-origin allelic expression biases in the brain eLife 2015;10.7554/eLife.07860.
  37. Hung, C. L., Hayward, C. C., Smith, H. A., Ashby, M. L., Lanz, L., Martínez-Galarza, J. R., ... & Zezas, A. 2015. Merger Signatures in the Dynamics of Star-forming Gas arXiv preprintarXiv:1511.08481.
  38. Huang, D., Song, C. L., Webb, T. A., Fang, S., Chang, C. Z., Moodera, J. S., ... & Hoffman, J. E. 2015. Revealing the Empty-State Electronic Structure of Single-Unit-Cell FeSe/SrTiO $ _ {3} $ arXiv preprint arXiv:1503.04792.
  39. Holmes, Avram J., et al. 2015. "Brain Genomics Superstruct Project initial data release with structural, functional, and behavioral measures." (Nature) Scientific data 2.
  40. Häse, F., Valleau, S., Pyzer-Knapp, E., & Aspuru-Guzik, A. 2015. Machine Learning Exciton Dynamics arXiv preprintarXiv:1511.07883.
  41. González, V. L., Andrade, S. C., Bieler, R., Collins, T. M., Dunn, C. W., Mikkelsen, P. M., ... & Giribet, G. 2015. A phylogenetic backbone for Bivalvia: an RNA-seq approach Proceedings of the Royal Society B: Biological Sciences,282(1801), 20142332.
  42. Giesa, T., Perry, C. C., & Buehler, M. J. 2015. Secondary Structure Transition and Critical Stress for a Model of Spider Silk Assembly Biomacromolecules.
  43. Genel, S., Fall, S. M., Hernquist, L., Vogelsberger, M., Snyder, G. F., Rodriguez-Gomez, V., ... & Springel, V. 2015. Galactic Angular Momentum in the Illustris Simulation: Feedback and the Hubble Sequence arXiv preprint arXiv:1503.01117.
  44. French, R. G., Dawson, R. I., & Showalter, M. R. 2015. Resonances, Chaos, and Short-term Interactions Among the Inner Uranian Satellites The Astronomical Journal,149(4), 142.
  45. Fernández, R., Giribet, G. 2015. Unnoticed in the tropics: phylogenomic resolution of the poorly-known arachnid order Ricinulei (Arachnida) Royal Society Open Science, 2:150065
  46. Feng, Y., Di-Matteo, T., Croft, R. A., Bird, S., Battaglia, N., & Wilkins, S. 2015. The BlueTides Simulation: First Galaxies and Reionization arXiv preprint arXiv:1504.06619.
  47. Farhadifar, R., Baer, C. F., Valfort, A. C., Andersen, E. C., Müller-Reichert, T., Delattre, M., & Needleman, D. J. 2015. Scaling, selection, and evolutionary dynamics of the mitotic spindle Current Biology,25(6), 732-740.
  48. Fang, S., Defo, R. K., Shirodkar, S. N., Lieu, S., Tritsaris, G. A., & Kaxiras, E. 2015. Ab initio tight-binding Hamiltonian for transition metal dichalcogenides Physical Review B,92(20), 205108.
  49. Cvijović, I., Good, B. H., Jerison, E. R., & Desai, M. M. 2015. Fate of a mutation in a fluctuating environment Proceedings of the National Academy of Sciences, 201505406.
  50. Corbett-Detig, R. B., Hartl, D. L., & Sackton, T. B. 2015. Natural selection constrains neutral diversity across a wide range of species PLoS Bioldoi:10.1371/journal.pbio.1002112
  51. Chotibut, T., & Nelson, D. R. 2015. Evolutionary dynamics with fluctuating population sizes and strong mutualism Physical Review E,92(2), 022718.
  52. Chéron, N., Yu, C., Kolawole, A. O., Shakhnovich, E. I., & Wobus, C. E. 2015. Repurposing of rutin for the inhibition of norovirus replication Archives of virology,160(9), 2353-2358.
  53. Chéron, N., Jasty, N., & Shakhnovich, E. I. 2015. OpenGrowth: an automated and rational algorithm for finding new protein ligands Journal of medicinal chemistry.
  54. Bray, A. D., Pillepich, A., Sales, L. V., Zhu, E., Genel, S., Rodriguez-Gomez, V., ... & Hernquist, L. 2015. Modeling Galactic Conformity with the Color-Halo Age Relation in the Illustris Simulation arXiv preprint arXiv:1508.05393.
  55. BICEP, T., Collaborations, K. A., Ade, P. A. R., Aikin, R. W., Barkats, D., Benton, S. J., ... & Vieregg, A. G. 2015. BICEP2/Keck Array IV: Optical Characterization and Performance of the BICEP2 and Keck Array Experiments arXiv preprint arXiv:1502.00596.
  56. Aspuru‐Guzik, A., Adams, R., Baldo, M., Aguilera‐Iparraguirre, J., & Gómez‐Bombarelli, R. 2015. June). 34.4: Invited Paper: Combinatorial Design of OLED‐Emitting Materials. In SID Symposium Digest of Technical Papers(Vol. 46, No. 1, pp. 505-506).
  57. Ade, P. A. R., Aikin, R. W., Barkats, D., Benton, S. J., Bischoff, C. A., Bock, J. J., ... & BICEP2 Collaboration. 2015. BICEP2 III: Instrumental Systematics arXiv preprint arXiv:1502.00608.
  58. Arnold, N. P., & Tziperman, E. 2015. Reductions in mid‐latitude upwelling‐favorable winds implied by weaker large‐scale Pliocene SST gradients Paleoceanography.
  59. Ade, P. A. R., Ahmed, Z., Aikin, R. W., Alexander, K. D., Barkats, D., Benton, S. J., ... & Sudiwala, R. V. 2015. BICEP2/Keck Array V: Measurements of B-mode Polarization at Degree Angular Scales and 150 GHz by the Keck Array arXiv preprint arXiv:1502.00643.
  60. Ade, P. A. R., Aikin, R. W., Amiri, M., Barkats, D., Benton, S. J., Bischoff, C. A., ... & Richter, S. 2015. Antenna-coupled TES bolometers used in BICEP2, Keck array, and SPIDER arXiv preprint arXiv:1502.00619.
  61. Childs, L.M. and Buckee, C.O. 2015. Dissecting the determinants of malaria chronicity: why within-host models struggle to reproduce infection dynamics Journal of The Royal Society Interface, 12(104), p.20141379.

2014 (51 publications)

  1. Sinkinson, M. 2014. Pricing and entry incentives with exclusive contracts: Evidence from smartphones Available at SSRN 2391745.
  2. Agarwal, N. 2014. An empirical model of the medical match (No. w20767). National Bureau of Economic Research.
  3. Zhao, S. D., Parmigiani, G., Huttenhower, C., & Waldron, L. 2014. Más-o-menos: a simple sign averaging method for discrimination in genomic data analysis Bioinformatics,30(21), 3062-3069.
  4. Mansuripur, T. S., & Mansuripur, M. 2014. Fresnel reflection from a cavity with net roundtrip gain Applied Physics Letters,104(12), 121106.
  5. Kawauchi, G. Y., & Giribet, G. 2014. Sipunculus nudus Linnaeus, 1766 (Sipuncula): cosmopolitan or a group of pseudo‐cryptic species? An integrated molecular and morphological approach Marine Ecology,35(4), 478-491.
  6. Hachmann, J., Olivares-Amaya, R., Jinich, A., Appleton, A. L., Blood-Forsythe, M. A., Seress, L. R., ... & Aspuru-Guzik, A. 2014. Lead candidates for high-performance organic photovoltaics from high-throughput quantum chemistry–the Harvard Clean Energy Project Energy & Environmental Science,7(2), 698-704.
  7. Gudjonson, H., Kats, M. A., Liu, K., Nie, Z., Kumacheva, E., & Capasso, F. 2014. Accounting for inhomogeneous broadening in nano-optics by electromagnetic modeling based on Monte Carlo methods Proceedings of the National Academy of Sciences,111(6), E639-E644.
  8. David, L. A., Maurice, C. F., Carmody, R. N., Gootenberg, D. B., Button, J. E., Wolfe, B. E., ... & Turnbaugh, P. J. 2014. Diet rapidly and reproducibly alters the human gut microbiome Nature,505(7484), 559-563.
  9. Zimmerman, K., Levitis, D., Addicott, E., & Pringle, A. 2014. Maximizing the mean nearest neighbor distance of a trait to choose among potential crosses and design a fully crossed mating experiment bioRxiv, 009720.
  10. Wordsworth, R. 2014. Atmospheric heat redistribution and collapse on tidally locked rocky planets arXiv preprint arXiv:1412.5575.
  11. Vogelsberger, M., Genel, S., Springel, V., Torrey, P., Sijacki, D., Xu, D., ... & Hernquist, L. 2014. Properties of galaxies reproduced by a hydrodynamic simulation Nature,509(7499), 177-182.
  12. Villaescusa-Navarro, F., Viel, M., Alonso, D., Datta, K. K., Bull, P., & Santos, M. G. 2014. Cross-correlating 21cm intensity maps with Lyman Break Galaxies in the post-reionization era arXiv preprint arXiv:1410.7393.
  13. Tan, S. M., Kirchner, R., Jin, J., Hofmann, O., McReynolds, L., Hide, W., & Lieberman, J. 2014. Sequencing of captive target transcripts identifies the network of regulated genes and functions of primate-specific miR-522 Cell reports,8(4), 1225-1239.
  14. Schlafly, E. F., Green, G., Finkbeiner, D. P., Jurić, M., Rix, H. W., Martin, N. F., ... & Waters, C. 2014. A Map of Dust Reddening to 4.5 kpc from Pan-STARRS1 The Astrophysical Journal,789(1), 15.
  15. Suchow, J. W. 2014. Measuring, monitoring, and maintaining memories in a partially observable mind Doctoral dissertation, Harvard University.
  16. Subramaniam, A. R., Zid, B. M., & O’Shea, E. K. 2014. An Integrated Approach Reveals Regulatory Controls on Bacterial Translation Elongation Cell,159(5), 1200-1211.
  17. Steiner, J. F., McClintock, J. E., Orosz, J. A., Remillard, R. A., Bailyn, C. D., Kolehmainen, M., & Straub, O. 2014. The Low-Spin Black Hole in LMC X-3 The Astrophysical Journal Letters,793(2), L29.
  18. Sanders, N., Betancourt, M., & Soderberg, A. 2014. Unsupervised Transient Light Curve Analysis Via Hierarchical Bayesian Inference arXiv preprint arXiv:1404.3619.
  19. Sanders, J. N., Andrade, X., & Aspuru-Guzik, A. 2014. A sparse-sampling approach for the fast computation of matrices: application to molecular vibrations arXiv preprint arXiv:1410.4848.
  20. Sackton, T. B., Corbett‐Detig, R. B., Nagaraju, J., Vaishna, L., Arunkumar, K. P., & Hartl, D. L. 2014. POSITIVE SELECTION DRIVES FASTER‐Z EVOLUTION IN SILKMOTHS Evolution,68(8), 2331-2342.
  21. Riesgo, A., Novo, M., Sharma, P. P., Peterson, M., Maldonado, M., & Giribet, G. 2014. Inferring the ancestral sexuality and reproductive condition in sponges (Porifera) Zoologica Scripta,43(1), 101-117.
  22. Punk, M., Chowdhury, D., & Sachdev, S. 2014. Topological excitations and the dynamic structure factor of spin liquids on the kagome lattice Nature Physics,10(4), 289-293.
  23. Parr, C. S., Wilson, M. N., Leary, M. P., Schulz, K. S., Lans, M. K., Walley, M. L., ... & Corrigan Jr, M. R. J. 2014. The encyclopedia of life v2: providing global access to knowledge about life on Earth Biodiversity data journal, (2).
  24. Moreno, J. 2014. Rings of star formation: Imprints of a close galaxy encounter arXiv preprint arXiv:1412.4443.
  25. Moore, M., Kuang, Z., & Blossey, P. N. 2014. A moisture budget perspective of the amount effect Geophysical Research Letters,41(4), 1329-1335.
  26. Miller, A., Bornn, L., Adams, R., & Goldsberry, K. 2014. Factorized point process intensities: A spatial analysis of professional basketball arXiv preprint arXiv:1401.0942.
  27. Martínez-Galarza, J. R., Smith, H. A., Lanz, L., Hayward, C. C., Zezas, A., Rosenthal, L., ... & Groves, B. 2014. Variations of the ISM Conditions Across the Main Sequence of Star-Forming Galaxies: Observations and Simulations arXiv preprint arXiv:1412.2760.
  28. Ma, D., Boos, W., & Kuang, Z. 2014. Effects of orography and surface heat fluxes on the south Asian summer monsoon Journal of Climate,27(17), 6647-6659.
  29. Lemer, S., Buge, B., Bemis, A., Giribet, G. 2014. First molecular phylogeny of the circumtropical bivalve family Pinnidae (Mollusca, Bivalvia): evidence for high levels of cryptic species diversity Molecular Phylogenetics and Evolution, 75: 11-23
  30. Lemer, S., Kawauchi, GY, Andrade, CS, Boyle, MJ, Giribet, G. 2014. Re-evaluating the phylogeny of Sipuncula through transcriptomics Molecular Phylogenetics and Evolution, 83: 174-183
  31. Laumer, C. E., & Giribet, G. 2014. Inclusive taxon sampling suggests a single, stepwise origin of ectolecithality in Platyhelminthes Biological Journal of the Linnean Society,111(3), 570-588.
  32. Lanz, L., Hayward, C. C., Zezas, A., Smith, H. A., Ashby, M. L., Brassington, N., ... & Hernquist, L. 2014. Simulated Galaxy Interactions as Probes of Merger Spectral Energy Distributions The Astrophysical Journal,785(1), 39.
  33. Kim, K. H., Ramadhar, T. R., Beemelmanns, C., Cao, S., Poulsen, M., Currie, C. R., & Clardy, J. 2014. Natalamycin A, an ansamycin from a termite-associated Streptomyces sp Chemical Science,5(11), 4333-4338.
  34. Karkare, K. S., Ade, P. A. R., Ahmed, Z., Aikin, R. W., Alexander, K. D., Amiri, M., ... & Schwarz, R. 2014. August). Keck Array and BICEP3: spectral characterization of 5000+ detectors. In SPIE Astronomical Telescopes+ Instrumentation(pp. 91533B-91533B). International Society for Optics and Photonics.
  35. Johnson, A. S., Yuen-Zhou, J., Aspuru-Guzik, A., & Krich, J. J. 2014. Practical witness for electronic coherences The Journal of chemical physics,141(24), 244109.
  36. Hyland, E. M., Wallace, E. W., & Murray, A. W. 2014. A Model for the Evolution of Biological Specificity: a Cross-Reacting DNA-Binding Protein Causes Plasmid Incompatibility Journal of bacteriology,196(16), 3002-3011.
  37. Hayward, C. C., Lanz, L., Ashby, M. L., Fazio, G., Hernquist, L., Martínez-Galarza, J. R., ... & Zezas, A. 2014. The total infrared luminosity may significantly overestimate the star formation rate of quenching and recently quenched galaxies Monthly Notices of the Royal Astronomical Society,445(2), 1598-1604.
  38. Guo, X., Sironi, L., & Narayan, R. 2014. Non-thermal Electron Acceleration in Low Mach Number Collisionless Shocks. I. Particle Energy Spectra and Acceleration Mechanism The Astrophysical Journal,794(2), 153.
  39. Gibbons, J. G., Branco, A. T., Yu, S., & Lemos, B. 2014. Ribosomal DNA copy number is coupled with gene expression variation and mitochondrial abundance in humans Nature communications,5.
  40. Frenkel, E. M., Good, B. H., & Desai, M. M. 2014. The fates of mutant lineages and the distribution of fitness effects of beneficial mutations in laboratory budding yeast populations Genetics,196(4), 1217-1226.
  41. Fernández, R., Vahtera, V., Laumer, C.E., Libro, S., Kaluziak, S., Sharma, P.P., Pérez-Porro, A., Edgecombe, G.D., Giribet, G. 2014. Evaluating topological conflict in centipede phylogeny using transcriptomic data sets Molecular Biology and Evolution, 31(6): 1500-1513.
  42. Fernández, R., Hormiga, G., Giribet, G. 2014. Phylogenomic analysis of spiders reveals non-monophyly of orb-weavers Current Biology24, 1772-1777
  43. Dasmeh, P., Serohijos, A. W., Kepp, K. P., & Shakhnovich, E. I. 2014. The influence of selection for protein stability on dN/dS estimations Genome biology and evolution,6(10), 2956-2967.
  44. Drout, M. R., Chornock, R., Soderberg, A. M., Sanders, N. E., McKinnon, R., Rest, A., ... & Waters, C. 2014. Rapidly Evolving and Luminous Transients from Pan-STARRS1 The Astrophysical Journal,794(1), 23.
  45. Cubuk, E. D., & Kaxiras, E. 2014. Theory of structural transformation in lithiated amorphous silicon Nano letters,14(7), 4065-4070.
  46. Chornock, R., Berger, E., Gezari, S., Zauderer, B. A., Rest, A., Chomiuk, L., ... & Wainscoat, R. 2014. The Ultraviolet-bright, Slowly Declining Transient PS1-11af as a Partial Tidal Disruption Event The Astrophysical Journal,780(1), 44.
  47. Carter, A. C., Davis-Dusenbery, B. N., Koszka, K., Ichida, J. K., & Eggan, K. 2014. Nanog-independent reprogramming to iPSCs with canonical factors Stem cell reports,2(2), 119-126.
  48. Akeju, O., Davis-Dusenbery, B. N., Cassel, S. H., Ichida, J. K., & Eggan, K. 2014. Ketamine exposure in early development impairs specification of the primary germ cell layers Neurotoxicology and teratology,43, 59-68.
  49. Ade, P. A. R., Aikin, R. W., Amiri, M., Barkats, D., Benton, S. J., Bischoff, C. A., ... & Wong, C. L. 2014. BICEP2. II. Experiment and three-year Data Set The Astrophysical Journal,792(1), 62.
  50. Ade, P. A. R., Aikin, R. W., Barkats, D., Benton, S. J., Bischoff, C. A., Bock, J. J., ... & Bicep2 Collaboration. 2014. Detection of B-mode polarization at degree angular scales by BICEP2 Physical Review Letters,112(24), 241101.
  51. Green, G. M., Schlafly, E. F., Finkbeiner, D. P., Jurić, M., Rix, H. W., Burgett, W., ... & Waters, C. 2014. Measuring Distances and Reddenings for a Billion Stars: Toward a 3D Dust Map from Pan-STARRS 1 The Astrophysical Journal,783(2), 114.

2013 (22 publications)

  1. Wang, A., Kaz, D. M., McGorty, R., & Manoharan, V. N. 2013. February). Relaxation dynamics of colloidal particles at liquid interfaces. In 4th International Symposium on Slow Dynamics in Complex Systems: Keep Going Tohoku(Vol. 1518, No. 1, pp. 336-343). AIP Publishing.
  2. Vikas, S. 2013. Quasars, Carbon, and supernovae: Exploring the distribution of elements in an expanding universe Doctoral dissertation, University of Pittsburgh.
  3. Vahtera, V., Edgecombe, G. D., & Giribet, G. 2013. Phylogenetics of scolopendromorph centipedes: can denser taxon sampling improve an artificial classification? Invertebrate Systematics,27(5), 578-602.
  4. Tritsaris, G. A., Malone, B. D., & Kaxiras, E. 2013. Optoelectronic properties of single-layer, double-layer, and bulk tin sulfide: A theoretical study Journal of Applied Physics,113(23), 233507.
  5. Tritsaris, G. A., Kaxiras, E., Meng, S., & Wang, E. 2013. Adsorption and diffusion of lithium on layered silicon for Li-ion storage Nano letters,13(5), 2258-2263.
  6. Tingley, M. P., & Huybers, P. 2013. Recent temperature extremes at high northern latitudes unprecedented in the past 600 years Nature,496(7444), 201-205.
  7. Suzuki, N., Maroof, A. M., Merkle, F. T., Koszka, K., Intoh, A., Armstrong, I., ... & Eggan, K. 2013. The mouse C9ORF72 ortholog is enriched in neurons known to degenerate in ALS and FTD Nature neuroscience,16(12), 1725-1727.
  8. Snyder, G. F. 2013. Modeling spatially and spectrally resolved observations to diagnose the formation of elliptical galaxies Doctoral dissertation, Harvard University
  9. Snyder, G. F., Hayward, C. C., Sajina, A., Jonsson, P., Cox, T. J., Hernquist, L., ... & Yan, L. 2013. Modeling Mid-infrared Diagnostics of Obscured Quasars and Starbursts The Astrophysical Journal,768(2), 168.
  10. Sanders, N. E., Soderberg, A. M., Foley, R. J., Chornock, R., Milisavljevic, D., Margutti, R., ... & Price, P. A. 2013. PS1-12sk is a Peculiar Supernova From a He-rich Progenitor System in a Brightest Cluster Galaxy Environment The Astrophysical Journal,769(1), 39.
  11. Nicolaisen, L. E., & Desai, M. M. 2013. Distortions in genealogies due to purifying selection and recombination Genetics,195(1), 221-230.
  12. Lunnan, R., Chornock, R., Berger, E., Milisavljevic, D., Drout, M., Sanders, N. E., ... & Price, P. A. 2013. PS1-10bzj: A fast, hydrogen-poor superluminous supernova in a metal-poor host galaxy The Astrophysical Journal,771(2), 97.
  13. Knap, M., Kantian, A., Giamarchi, T., Bloch, I., Lukin, M. D., & Demler, E. 2013. Probing real-space and time-resolved correlation functions with many-body Ramsey interferometry Physical review letters,111(14), 147205.
  14. Keenan, T. F., Davidson, E. A., Munger, J. W., & Richardson, A. D. 2013. Rate my data: quantifying the value of ecological data for the development of models of the terrestrial carbon cycle Ecological Applications,23(1), 273-286.
  15. Ingram, T., & Mahler, D. L. 2013. SURFACE: detecting convergent evolution from comparative data by fitting Ornstein‐Uhlenbeck models with stepwise Akaike Information Criterion Methods in Ecology and Evolution,4(5), 416-425.
  16. Herman, M. J., & Kuang, Z. 2013. Linear response functions of two convective parameterization schemes Journal of Advances in Modeling Earth Systems,5(3), 510-541.doi:10.1002/jame.20037.
  17. Hayward, C. C., Narayanan, D., Kereš, D., Jonsson, P., Hopkins, P. F., Cox, T. J., & Hernquist, L. 2013. Submillimetre galaxies in a hierarchical universe: number counts, redshift distribution and implications for the IMF Monthly Notices of the Royal Astronomical Society,428(3), 2529-2547.
  18. Dalla Torre, E. G., Otterbach, J., Demler, E., Vuletic, V., & Lukin, M. D. 2013. Dissipative preparation of spin squeezed atomic ensembles in a steady state Physical review letters,110(12), 120402.
  19. Cobey, S., & Lipsitch, M. 2013. Pathogen diversity and hidden regimes of apparent competition The American naturalist,181(1), 12.
  20. Chornock, R., Berger, E., Rest, A., Milisavljevic, D., Lunnan, R., Foley, R. J., ... & Price, P. A. 2013. PS1-10afx at z= 1.388: Pan-STARRS1 Discovery of a New Type of Superluminous Supernova The Astrophysical Journal,767(2), 162.
  21. Blasi, T., Borunda, M. F., Räsänen, E., & Heller, E. J. 2013. Optimal local control of coherent dynamics in custom-made nanostructures Physical Review B,87(24), 241303.
  22. Wallace, E. W., Airoldi, E. M., & Drummond, D. A. 2013. Estimating selection on synonymous codon usage from noisy experimental data Molecular biology and evolution, mst051.

2012 (29 publications)

  1. Zhao, K., Tritsaris, G. A., Pharr, M., Wang, W. L., Okeke, O., Suo, Z., ... & Kaxiras, E. 2012. Reactive flow in silicon electrodes assisted by the insertion of lithium Nano letters,12(8), 4397-4403.
  2. Youdin, A. N., Kratter, K. M., & Kenyon, S. J. 2012. Circumbinary Chaos: Using Pluto's Newest Moon to Constrain the Masses of Nix and Hydra The Astrophysical Journal,755(1), 17.
  3. Watson, M. A., Rappoport, D., Lee, E. M., Olivares-Amaya, R., & Aspuru-Guzik, A. 2012. Electronic structure calculations in arbitrary electrostatic environments The Journal of chemical physics,136(2), 024101.
  4. Wang, Y., Khardon, R., & Protopapas, P. 2012. Nonparametric bayesian estimation of periodic light curves The Astrophysical Journal,756(1), 67.
  5. Vahtera, V., Edgecombe, G. D., & Giribet, G. 2012. Evolution of blindness in scolopendromorph centipedes (Chilopoda: Scolopendromorpha): insight from an expanded sampling of molecular data Cladistics,28(1), 4-20.
  6. Tritsaris, G. A., Mathioudakis, C., Kelires, P. C., & Kaxiras, E. 2012. Optical and elastic properties of diamond-like carbon with metallic inclusions: A theoretical study Journal of Applied Physics,112(10), 103503.
  7. Tritsaris, G. A., Zhao, K., Okeke, O. U., & Kaxiras, E. 2012. Diffusion of lithium in bulk amorphous silicon: a theoretical study The Journal of Physical Chemistry C,116(42), 22212-22216.
  8. Steiner, J. F., McClintock, J. E., & Reid, M. J. 2012. The Distance, Inclination, and Spin of the Black Hole Microquasar H1743-322 The Astrophysical Journal Letters,745(1), L7.
  9. Sijacki, D., Vogelsberger, M., Kereš, D., Springel, V., & Hernquist, L. 2012. Moving mesh cosmology: the hydrodynamics of galaxy formation Monthly Notices of the Royal Astronomical Society,424(4), 2999-3027.
  10. Sharma, P. P. 2012. New Australasian Zalmoxidae (Opiliones: Laniatores) and a new case of male polymorphism in Opiliones Zootaxa,3236, 1-35.
  11. Sharma, P. P., González, V. L., Kawauchi, G. Y., Andrade, S. C., Guzmán, A., Collins, T. M., ... & Giribet, G. 2012. Phylogenetic analysis of four nuclear protein-encoding genes largely corroborates the traditional classification of Bivalvia (Mollusca) Molecular Phylogenetics and Evolution,65(1), 64-74.
  12. Sharma, P. P., Schwager, E. E., Extavour, C. G., & Giribet, G. 2012. Hox gene expression in the harvestman Phalangium opilio reveals divergent patterning of the chelicerate opisthosoma Evolution & development,14(5), 450-463.
  13. Sanders, J. N., Saikin, S. K., Mostame, S., Andrade, X., Widom, J. R., Marcus, A. H., & Aspuru-Guzik, A. 2012. Compressed sensing for multidimensional spectroscopy experiments The Journal of Physical Chemistry Letters,3(18), 2697-2702.
  14. Rotz, D. 2012. Do Outside Options Matter Inside Marriage? Evidence from State Welfare Reforms Evidence from State Welfare Reforms (June 20, 2012).
  15. Räsänen, E., Blasi, T., Borunda, M. F., & Heller, E. J. 2012. Optical control of entangled states in semiconductor quantum wells Physical Review B,86(20), 205308.
  16. Pichara, K., Protopapas, P., Kim, D. W., Marquette, J. B., & Tisserand, P. 2012. An improved quasar detection method in EROS-2 and MACHO LMC data sets Monthly Notices of the Royal Astronomical Society,427(2), 1284-1297.
  17. Padmanabhan, N., Xu, X., Eisenstein, D. J., Scalzo, R., Cuesta, A. J., Mehta, K. T., & Kazin, E. 2012. A 2 per cent distance to z= 0.35 by reconstructing baryon acoustic oscillations–I. Methods and application to the Sloan Digital Sky Survey Monthly Notices of the Royal Astronomical Society,427(3), 2132-2145.
  18. Liu, J., Orosz, J., & Bregman, J. N. 2012. Dynamical mass constraints on the ultraluminous X-ray source NGC 1313 X-2 The Astrophysical Journal,745(1), 89.
  19. Kim, D. W., Protopapas, P., Trichas, M., Rowan-Robinson, M., Khardon, R., Alcock, C., & Byun, Y. I. 2012. A Refined QSO Selection Method Using Diagnostics Tests: 663 QSO Candidates in the Large Magellanic Cloud The Astrophysical Journal,747(2), 107.
  20. Kaz, D. M., McGorty, R., Mani, M., Brenner, M. P., & Manoharan, V. N. 2012. Physical ageing of the contact line on colloidal particles at liquid interfaces Nature materials,11(2), 138-142.
  21. Kawauchi, G. Y., Sharma, P. P., & Giribet, G. 2012. Sipunculan phylogeny based on six genes, with a new classification and the descriptions of two new families Zoologica Scripta,41(2), 186-210.
  22. Hayward, C. C., Jonsson, P., Kereš, D., Magnelli, B., Hernquist, L., & Cox, T. J. 2012. How to distinguish starbursts and quiescently star-forming galaxies: the ‘bimodal’submillimetre galaxy population as a case study Monthly Notices of the Royal Astronomical Society,424(2), 951-970.
  23. Giribet, G., Sharma, P. P., Benavides, L. R., Boyer, S. L., Clouse, R. M., De Bivort, B. L., ... & Schwendinger, P. J. 2012. Evolutionary and biogeographical history of an ancient and global group of arachnids (Arachnida: Opiliones: Cyphophthalmi) with a new taxonomic arrangement Biological Journal of the Linnean Society,105(1), 92-130.
  24. Fung, J., Perry, R. W., Dimiduk, T. G., & Manoharan, V. N. 2012. Imaging multiple colloidal particles by fitting electromagnetic scattering solutions to digital holograms Journal of Quantitative Spectroscopy and Radiative Transfer,113(18), 2482-2489.
  25. Edgecombe, G. D., Vahtera, V., Stock, S. R., Kallonen, A., Xiao, X., Rack, A., & Giribet, G. 2012. A scolopocryptopid centipede (Chilopoda: Scolopendromorpha) from Mexican amber: synchrotron microtomography and phylogenetic placement using a combined morphological and molecular data set Zoological Journal of the Linnean Society,166(4), 768-786.
  26. Derr, J., Manapat, M. L., Rajamani, S., Leu, K., Xulvi-Brunet, R., Joseph, I., ... & Chen, I. A. 2012. Prebiotically plausible mechanisms increase compositional diversity of nucleic acid sequences Nucleic acids research,40(10), 4711-4722.
  27. Clements, M. D., Bart, H. L., & Hurley, D. L. 2012. A different perspective on the phylogenetic relationships of the Moxostomatini (Cypriniformes: Catostomidae) based on cytochrome-b and Growth Hormone intron sequences Molecular phylogenetics and evolution,63(1), 159-167.
  28. Andrade, X., Sanders, J. N., & Aspuru-Guzik, A. 2012. Application of compressed sensing to the simulation of atomic systems Proceedings of the National Academy of Sciences,109(35), 13928-13933.
  29. Dawson, R. I., Johnson, J. A., Morton, T. D., Crepp, J. R., Fabrycky, D. C., Murray-Clay, R. A., & Howard, A. W. 2012. The photoeccentric effect and proto-hot Jupiters. II. KOI-1474.01, a candidate eccentric planet perturbed by an unseen companion The Astrophysical Journal,761(2), 163.

2011 (22 publications)

  1. Tchekhovskoy, A., Narayan, R., & McKinney, J. C. 2011. Efficient generation of jets from magnetically arrested accretion on a rapidly spinning black hole Monthly Notices of the Royal Astronomical Society: Letters,418(1), L79-L83.
  2. Aktipis, S. W., Boehm, E., & Giribet, G. 2011. Another step towards understanding the slit‐limpets (Fissurellidae, Fissurelloidea, Vetigastropoda, Gastropoda): a combined five‐gene molecular phylogeny Zoologica Scripta,40(3), 238-259.
  3. Snyder, G. F., Cox, T. J., Hayward, C. C., Hernquist, L., & Jonsson, P. 2011. K+ A Galaxies as the Aftermath of Gas-rich Mergers: Simulating the Evolution of Galaxies as Seen by Spectroscopic Surveys The Astrophysical Journal,741(2), 77.
  4. Smith, S. A., Wilson, N. G., Goetz, F. E., Feehery, C., Andrade, S. C., Rouse, G. W., ... & Dunn, C. W. 2011. Resolving the evolutionary relationships of molluscs with phylogenomic tools Nature,480(7377), 364-367.
  5. Sharma, P. P., Vahtera, V., Kawauchi, G. Y., & Giribet, G. 2011. Running WILD: the case for exploring mixed parameter sets in sensitivity analysis Cladistics,27(5), 538-549.
  6. Rotz, D. 2011. Why have divorce rates fallen? The role of women’s age at marriage The Role of Women’s Age at Marriage (December 20, 2011).
  7. Olivares-Amaya, R., Stopa, M., Andrade, X., Watson, M. A., & Aspuru-Guzik, A. 2011. Anion stabilization in electrostatic environments The Journal of Physical Chemistry Letters,2(7), 682-688.
  8. Narayanan, D., Cox, T. J., Hayward, C. C., & Hernquist, L. 2011. The Kennicutt–Schmidt star formation relation at z∼ 2 Monthly Notices of the Royal Astronomical Society,412(1), 287-294.
  9. Ma, D., & Kuang, Z. 2011. Modulation of radiative heating by the Madden‐Julian Oscillation and convectively coupled Kelvin waves as observed by CloudSat Geophysical Research Letters,38(21).
  10. Krich, J. J., & Aspuru-Guzik, A. 2011. Scaling and localization lengths of a topologically disordered system Physical review letters,106(15), 156405.
  11. Kim, D. W., Protopapas, P., Byun, Y. I., Alcock, C., Khardon, R., & Trichas, M. 2011. Quasi-stellar object selection algorithm using time variability and machine learning: Selection of 1620 quasi-stellar object candidates from MACHO Large Magellanic Cloud database The Astrophysical Journal,735(2), 68.
  12. Kajiharal, H., Yamasaki, H., & Andrade, S. C. 2011. Carinoma hamanako sp. nov.(Nemertea: Palaeonemertea), the First Representative of the Genus from the Northwest Pacific Species Diversity,16, 149-165.
  13. Hayward, C. C., Kereš, D., Jonsson, P., Narayanan, D., Cox, T. J., & Hernquist, L. 2011. What Does a Submillimeter Galaxy Selection Actually Select? The Dependence of Submillimeter Flux Density on Star Formation Rate and Dust Mass The Astrophysical Journal,743(2), 159.
  14. Hartman, K., Johnson, J. L., Bertoni, M. I., Recht, D., Aziz, M. J., Scarpulla, M. A., & Buonassisi, T. 2011. SnS thin-films by RF sputtering at room temperature Thin Solid Films,519(21), 7421-7424.
  15. Hachmann, J., Olivares-Amaya, R., Atahan-Evrenk, S., Amador-Bedolla, C., Sánchez-Carrera, R. S., Gold-Parker, A., ... & Aspuru-Guzik, A. 2011. The Harvard clean energy project: large-scale computational screening and design of organic photovoltaics on the world community grid The Journal of Physical Chemistry Letters,2(17), 2241-2251.
  16. Gou, L., McClintock, J. E., Reid, M. J., Orosz, J. A., Steiner, J. F., Narayan, R., ... & Davis, S. W. 2011. The extreme spin of the black hole in Cygnus X-1 The Astrophysical Journal,742(2), 85.
  17. Fields, A. P., & Cohen, A. E. 2011. Electrokinetic trapping at the one nanometer limit Proceedings of the National Academy of Sciences,108(22), 8937-8942.
  18. Dawson, R. I., Murray-Clay, R. A., & Fabrycky, D. C. 2011. On the Misalignment of the Directly Imaged Planet β Pictoris b with the System's Warped Inner Disk The Astrophysical Journal Letters,743(1), L17.
  19. Casse, B. D. F., Lu, W. T., Huang, Y. J., & Sridhar, S. 2011. Robust method to determine the resolution of a superlens by analyzing the near-field image of a two-slit object arXiv preprint arXiv:1105.0182.
  20. Berg, E., Levin, M., & Altman, E. 2011. Quantized Pumping and Topology of the Phase Diagram for a System of Interacting Bosons Physical review letters,106(11), 110405.
  21. Andrade, S. C., Norenburg, J. L., & Solferini, V. N. 2011. Worms without borders: genetic diversity patterns in four Brazilian Ototyphlonemertes species (Nemertea, Hoplonemertea) Marine biology,158(9), 2109-2124.
  22. Aktipis, S. W., & Giribet, G. 2011. Testing relationships among the vetigastropod taxa: a molecular approach Journal of Molluscan Studies, eyr023.

2010 (19 publications)

  1. Xu, X., Narayanan, D., & Walker, C. 2010. Molecular Disk Properties in Early-type Galaxies The Astrophysical Journal Letters,721(2), L112.
  2. Tingley, M. P., & Huybers, P. 2010. A Bayesian algorithm for reconstructing climate anomalies in space and time. Part II: Comparison with the regularized expectation-maximization algorithm Journal of Climate,23(10), 2782-2800.
  3. Tingley, M. P., & Huybers, P. 2010. A Bayesian algorithm for reconstructing climate anomalies in space and time. Part I: Development and applications to paleoclimate reconstruction problems Journal of Climate,23(10), 2759-2781.
  4. Romps, D. M., & Kuang, Z. 2010. Nature versus nurture in shallow convection Journal of the Atmospheric Sciences,67(5), 1655-1666.
  5. Rogers, R. L., Bedford, T., Lyons, A. M., & Hartl, D. L. 2010. Adaptive impact of the chimeric gene Quetzalcoatl in Drosophila melanogaster Proceedings of the National Academy of Sciences,107(24), 10943-10948.
  6. Narayanan, D., Dey, A., Hayward, C. C., Cox, T. J., Bussmann, R. S., Brodwin, M., ... & Hernquist, L. 2010. A physical model for z∼ 2 dust-obscured galaxies Monthly Notices of the Royal Astronomical Society,407(3), 1701-1720.
  7. Narayanan, D., Hayward, C. C., Cox, T. J., Hernquist, L., Jonsson, P., Younger, J. D., & Groves, B. 2010. The formation of high-redshift submillimetre galaxies Monthly Notices of the Royal Astronomical Society,401(3), 1613-1619.
  8. Nadell, C. D., Foster, K. R., & Xavier, J. B. 2010. Emergence of spatial structure in cell groups and the evolution of cooperation PLoS computational biology,6(3), e1000716.
  9. Murienne, J., Karaman, I., & Giribet, G. 2010. Explosive evolution of an ancient group of Cyphophthalmi (Arachnida: Opiliones) in the Balkan Peninsula Journal of Biogeography,37(1), 90-102.
  10. Murienne, J., Edgecombe, G. D., & Giribet, G. 2010. Including secondary structure, fossils and molecular dating in the centipede tree of life Molecular Phylogenetics and Evolution,57(1), 301-313.
  11. McEachern, F. M., Ćuk, M., & Stewart, S. T. 2010. Dynamical evolution of the Hungaria asteroids Icarus,210(2), 644-654.
  12. Marcus, R. A., Sasselov, D., Stewart, S. T., & Hernquist, L. 2010. Water/icy super-Earths: giant impacts and maximum water content The Astrophysical Journal Letters,719(1), L45.
  13. Marcus, R. A., Sasselov, D., Hernquist, L., & Stewart, S. T. 2010. Minimum radii of super-Earths: constraints from giant impacts The Astrophysical Journal Letters,712(1), L73.
  14. Leinhardt, Z. M., Marcus, R. A., & Stewart, S. T. 2010. The formation of the collisional family around the dwarf planet Haumea The Astrophysical Journal,714(2), 1789.
  15. Kim, D. W., Protopapas, P., Alcock, C., Byun, Y. I., Kyeong, J., Lee, B. C., ... & Zhang, Z. W. 2010. The Taiwan-American Occultation Survey Project Stellar Variability. I. Detection of Low-Amplitude δ Scuti Stars The Astronomical Journal,139(2), 757.
  16. Foley, R. J., Narayan, G., Challis, P. J., Filippenko, A. V., Kirshner, R. P., Silverman, J. M., & Steele, T. N. 2010. SN? 2006bt: A Perplexing, Troublesome, and Possibly Misleading Type Ia Supernova The Astrophysical Journal,708(2), 1748.
  17. Bush, S. J., Cox, T. J., Hayward, C. C., Thilker, D., Hernquist, L., & Besla, G. 2010. Spiral-Induced Star Formation in the Outer Disks of Galaxies The Astrophysical Journal,713(2), 780.
  18. Goldman, J., & Gabrielse, G. 2010. Optimized planar Penning traps for quantum-information studies Physical Review A,81(5), 052335.
  19. Berezovsky, J., Borunda, M. F., Heller, E. J., & Westervelt, R. M. 2010. Imaging coherent transport in graphene (part I): mapping universal conductance fluctuations Nanotechnology,21(27), 274013.

2009 (4 publications)

  1. Younger, J. D., Hayward, C. C., Narayanan, D., Cox, T. J., Hernquist, L., & Jonsson, P. 2009. The merger-driven evolution of warm infrared luminous galaxies Monthly Notices of the Royal Astronomical Society: Letters,396(1), L66-L70.
  2. Likovich, E. M., Russell, K. J., Narayanamurti, V., Lu, H., & Gossard, A. C. 2009. Direct injection tunnel spectroscopy of a pn junction Applied Physics Letters,95(2), 022106_1-022106_3.
  3. Blocker, A. W., Protopapas, P., & Alcock, C. R. 2009. A Bayesian approach to the analysis of time symmetry in light curves: reconsidering Scorpius X-1 occultations The Astrophysical Journal,701(2), 1742.
  4. Narayanan, D., Cox, T. J., Hayward, C. C., Younger, J. D., & Hernquist, L. 2009. The star-forming molecular gas in high-redshift Submillimetre Galaxies Monthly Notices of the Royal Astronomical Society,400(4), 1919-1935.