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Publications Acknowledging the FASRC Cluster

After Sept. 24, 2019
To acknowledge use of the Cannon cluster in your publications please use the following text as a guideline:
"The computations in this paper were run on the FASRC Cannon cluster supported by the FAS Division of Science Research Computing Group at Harvard University."
Prior to Sept. 24, 2019
To acknowledge use of Odyssey in your publications please use the following text as a guideline:
"The computations in this paper were run on the FASRC Odyssey cluster supported by the FAS Division of Science Research Computing Group at Harvard University."

We are always very interested in hearing about research conducted with the help of our computing resources. If you do not find your publication listed below, we encourage you to send us details so that we can include them.

2021 (27 publications)

  1. Wu, Y., Mooring, T.A. and Linz, M., 2021. 2021. Policy and weather influences on mobility during the early US COVID-19 Proceedings of the National Academy of Sciences, 118(22).
  2. Huang, Theodore and Ploenzke, Matthew and Braun, Danielle 2021. SNIP: An Adaptation of Sorted Neighborhood Methods for Deduplicating Pedigree Data arXiv preprint arXiv:2108.08773, 2021.
  3. Phillips, Angela M and Lawrence, Katherine R and Moulana, Alief and Dupic, Thomas and Chang, Jeffrey and Johnson, Milo S and Cvijovic, Ivana and Mora, Thierry and Walczak, Aleksandra M and Desai, Michael M 2021. Binding affinity landscapes constrain the evolution of broadly neutralizing anti-influenza antibodies bioRxiv, 2021.
  4. Bell, Elliot and Zhu, Ziyan and Watanabe, Kenji and Taniguchi, Takashi and Kaxiras, Efthimios and Luskin, Mitchell and Wang, Ke and others 2021. Gate-tunable Veselago Interference in a Bipolar Graphene Microcavity arXiv preprint arXiv:2106.09651, 2021.
  5. Maity, Smarak and Pingault, Benjamin and Joe, Graham and Chalupnik, Michelle and Assump{\c{c}}{\~a}o, Daniel and Cornell, Eliza and Shao, Linbo and Lon{\v{c}}ar, Marko 2021. Coherent coupling of mechanics to a single nuclear spin arXiv preprint arXiv:2107.10961, 2021.
  6. Semeghini, Giulia and Levine, Harry and Keesling, Alexander and Ebadi, Sepehr and Wang, Tout T and Bluvstein, Dolev and Verresen, Ruben and Pichler, Hannes and Kalinowski, Marcin and Samajdar, Rhine and others 2021. Probing Topological Spin Liquids on a Programmable Quantum Simulator arXiv preprint arXiv:2104.04119, 2021.
  7. Ye, Linda and Fang, Shiang and Kang, Min Gu and Kaufmann, Josef and Lee, Yonghun and Denlinger, Jonathan and Jozwiak, Chris and Bostwick, Aaron and Rotenberg, Eli and Kaxiras, Efthimios and others 2021. A flat band-induced correlated kagome metal arXiv preprint arXiv:2106.10824, 2021.
  8. Earnest, Rebecca and R{\"o}nn, Minttu M and Bellerose, Meghan and Menon-Johansson, AS and Berruti, Andr{\'e}s A and Chesson, Harrell W and Gift, Thomas L and Hsu, Katherine K and Testa, Christian and Zhu, Lin and others 2021. Modeling the Cost-Effectiveness of Express Multi-Site Gonorrhea Screening among Men Who Have Sex with Men in the United States Sexually Transmitted Diseases, 2021.
  9. Vandermause, Jonathan and Xie, Yu and Lim, Jin Soo and Owen, Cameron J and Kozinsky, Boris 2021. Active learning of reactive Bayesian force fields: Application to heterogeneous hydrogen-platinum catalysis dynamics arXiv preprint arXiv:2106.01949, 2021.
  10. Prokopenko, Dmitry and Lee, Sanghun and Hecker, Julian and Mullin, Kristina and Morgan, Sarah and Katsumata, Yuriko and Weiner, Michael W and Fardo, David W and Laird, Nan and Bertram, Lars and others 2021. Region-based analysis of rare genomic variants in whole-genome sequencing datasets reveal two novel Alzheimer's disease-associated genes: DTNB and DLG2 medRxiv, 2021.
  11. Odintsova, TA and Serov, EA and Balashov, AA and Koshelev, MA and Koroleva, AO and Simonova, AA and Tretyakov, M Yu and Filippov, NN and Chistikov, DN and Finenko, AA and others 2021. CO2--CO2 and CO2--Ar continua at millimeter wavelengths Journal of Quantitative Spectroscopy and Radiative Transfer Vol. 258, pp. 107400, 2021.
  12. Wang, Pengcheng and Burley, John T and Liu, Yang and Chang, Jiang and Chen, De and Lu, Qi and Li, Shou-Hsien and Zhou, Xuming and Edwards, Scott and Zhang, Zhengwang 2021. Genomic Consequences of Long-Term Population Decline in Brown Eared Pheasant Molecular biology and evolution Vol. 38, No. 1, pp. 263--273, 2021.
  13. Chen, Qiuming and Wu, Yanchang and Huang, Zhaolin and Zhang, Wenli 2021. Kinetic study and molecular dynamics simulation of two novel mannose isomerases Catalysis Science \& Technology, 2021.
  14. Kleiner, Ned and Chan, Pak Wah and Wang, Lei and Ma, Ding and Kuang, Zhiming 2021. Effects of Climate Model Mean-State Bias on Blocking Underestimation Geophysical Research Letters Vol. 48, No. 13, pp. e2021GL094129, 2021.
  15. Yan, Yujing and Davis, Charles C and Dimitrov, Dimitar and Wang, Zhiheng and Rahbek, Carsten and Borregaard, Michael Krabbe 2021. Phytogeographic history of the Tea family inferred through high-resolution phylogeny and fossils Systematic Biology, 2021.
  16. Goulet-Scott, Benjamin E and Garner, Austin G and Hopkins, Robin 2021. Genomic analyses overturn two long-standing homoploid hybrid speciation hypotheses Evolution, 2021.
  17. Tang, Ming and Kaymaz, Yasin and Logeman, Brandon L and Eichhorn, Stephen and Liang, Zhengzheng S and Dulac, Catherine and Sackton, Timothy B 2021. Evaluating single-cell cluster stability using the Jaccard similarity index Bioinformatics Vol. 37, No. 15, pp. 2212--2214, 2021.
  18. Green, Gregory M and Rix, Hans-Walter and Tschesche, Leon and Finkbeiner, Douglas and Zucker, Catherine and Schlafly, Edward F and Rybizki, Jan and Fouesneau, Morgan and Andrae, Ren{\'e} and Speagle, Joshua 2021. Data-driven Stellar Models The Astrophysical Journal Vol. 907, No. 1, pp. 57, 2021.
  19. Saydjari, Andrew K and Portillo, Stephen KN and Slepian, Zachary and Kahraman, Sule and Burkhart, Blakesley and Finkbeiner, Douglas P 2021. Classification of Magnetohydrodynamic Simulations Using Wavelet Scattering Transforms The Astrophysical Journal Vol. 910, No. 2, pp. 122, 2021.
  20. Chamberlain, Catherine J and Cook, Benjamin I and Morales-Castilla, Ignacio and Wolkovich, Elizabeth M 2021. Climate change reshapes the drivers of false spring risk across European trees New Phytologist Vol. 229, No. 1, pp. 323--334, 2021.
  21. Xie, Michael E and Adam, Yoav and Fan, Linlin Z and B{\"o}hm, Urs L and Kinsella, Ian and Zhou, Ding and Rozsa, Marton and Singh, Amrita and Svoboda, Karel and Paninski, Liam and others 2021. High-fidelity estimates of spikes and subthreshold waveforms from 1-photon voltage imaging in vivo Cell reports Vol. 35, No. 1, pp. 108954, 2021.
  22. Lamichhaney, Sangeet and Catullo, Renee and Keogh, J Scott and Clulow, Simon and Edwards, Scott V and Ezaz, Tariq 2021. A bird-like genome from a frog: Mechanisms of genome size reduction in the ornate burrowing frog, Platyplectrum ornatum Proceedings of the National Academy of Sciences Vol. 118, No. 11, 2021.
  23. Zavatone-Veth, Jacob A and Pehlevan, Cengiz 2021. Exact priors of finite neural networks arXiv preprint arXiv:2104.11734, 2021.
  24. Graff, David E and Shakhnovich, Eugene I and Coley, Connor W 2021. Accelerating high-throughput virtual screening through molecular pool-based active learning Chemical Science, 2021.
  25. Li, Qing-Jie and K{\"u}{\c{c}}{\"u}kbenli, Emine and Lam, Stephen and Khaykovich, Boris and Kaxiras, Efthimios and Li, Ju 2021. Development of robust neural-network interatomic potential for molten salt Cell Reports Physical Science Vol. 2, No. 3, pp. 100359, 2021.
  26. Torrence, Margaret E and MacArthur, Michael R and Hosios, Aaron M and Valvezan, Alexander J and Asara, John M and Mitchell, James R and Manning, Brendan D 2021. The mTORC1-mediated activation of ATF4 promotes protein and glutathione synthesis downstream of growth signals Elife Vol. 10, pp. e63326, 2021.
  27. Chandrasekhar, Arun G and Goldsmith-Pinkham, Paul and Jackson, Matthew O and Thau, Samuel 2021. Interacting regional policies in containing a disease Proceedings of the National Academy of Sciences Vol. 118, No. 19, 2021.

2020 (44 publications)

  1. Gu, Meng and Conroy, Charlie and Diemer, Benedikt and Hernquist, Lars and Marinacci, Federico and Nelson, Dylan and Pakmor, R{\"u}diger and Pillepich, Annalisa and Vogelsberger, Mark 2020. Coordinated Assembly of Galaxy Groups and Clusters in the IllustrisTNG Simulations arXiv preprint arXiv:2010.04166, 2020.
  2. Li, Chenyuan and Carr, Stephen and Zhu, Ziyan and Kaxiras, Efthimios and Sachdev, Subir and Kruchkov, Alex 2020. Coexistence of ultraheavy and ultrarelativistic Dirac quasiparticles in sandwiched trilayer graphene. Bulletin of the American Physical Society Vol. 65, 2020.
  3. Bitran, Amir and Jacobs, William M and Shakhnovich, Eugene 2020. DBFOLD: An efficient algorithm for computing folding pathways of complex proteins bioRxiv, 2020.
  4. Kalouptsidi, Myrto and Kitamura, Yuichi and Lima, Lucas and Souza-Rodrigues, Eduardo A 2020. Partial identification and inference for dynamic models and counterfactuals 2020.
  5. Tabri, Rami V and Walker, Christopher D 2020. Inference for Moment Inequalities: A Constrained Moment Selection Procedure arXiv preprint arXiv:2008.09021, 2020.
  6. Dai, Chenguang 2020. Methods on Model Selection: Bayes Factor Approximation and False Discovery Rate Control 2020.
  7. Weninger, Nicolas 2020. Electro-Acoustic Modulation of Surface Acoustic Waves on Thin-Film Lithium Niobate Substrate 2020.
  8. Sondak, David and Protopapas, Pavlos 2020. Learning a Reduced Basis of Dynamical Systems using an Autoencoder arXiv preprint arXiv:2011.07346, 2020.
  9. Germaine, T St and Ade, PAR and Ahmed, Zeeshan and Amiri, Mandana and Barkats, Denis and Thakur, R Basu and Bischoff, Colin A and Bock, James J and Boenish, Hans and Bullock, Eric and others 2020. Analysis of Temperature-to-Polarization Leakage in BICEP3 and Keck CMB Data from 2016 to 2018 Millimeter, Submillimeter, and Far-Infrared Detectors and Instrumentation for Astronomy X Vol. 11453, pp. 114532E, 2020.
  10. Brito, Jaqueline J and Mosqueiro, Thiago and Rotman, Jeremy and Xue, Victor and Chapski, Douglas J and la Hoz, Juan De and Matias, Paulo and Martin, Lana S and Zelikovsky, Alex and Pellegrini, Matteo and others 2020. Telescope: an interactive tool for managing large-scale analysis from mobile devices GigaScience Vol. 9, No. 1, pp. giz163, 2020.
  11. Obeid, Dina and Zavatone-Veth, Jacob A and Pehlevan, Cengiz 2020. Statistical structure of the trial-to-trial timing variability in synfire chains Physical Review E Vol. 102, No. 5, pp. 052406, 2020.
  12. Dai, Chenguang and Liu, Jun S 2020. Wang-Landau algorithm as stochastic optimization and its acceleration Physical Review E Vol. 101, No. 3, pp. 033301, 2020.
  13. Ding, Feng and Wordsworth, Robin D 2020. Stabilization of dayside surface liquid water via tropopause cold trapping on arid slowly rotating tidally locked planets The Astrophysical Journal Letters Vol. 891, No. 1, pp. L18, 2020.
  14. Wei, Xin and Chan, Pak Wah and Kuang, Zhiming 2020. Two-Point Mixing, Buoyancy Sorting, and Updraft Dilution in the RACORO Campaign Geophysical Research Letters Vol. 47, No. 23, pp. e2020GL090674, 2020.
  15. Sin, Simon Yung Wa and Lu, Lily and Edwards, Scott V 2020. De Novo Assembly of the Northern Cardinal (Cardinalis cardinalis) Genome Reveals Candidate Regulatory Regions for Sexually Dichromatic Red Plumage Coloration G3: Genes, Genomes, Genetics Vol. 10, No. 10, pp. 3541--3548, 2020.
  16. Nelson, Erica L and Khan, Saira A and Thorve, Swapna and Greenough, P Gregg 2020. Modeling pastoralist movement in response to environmental variables and conflict in Somaliland: Combining agent-based modeling and geospatial data Plos one Vol. 15, No. 12, pp. e0244185, 2020.
  17. Ji, Yinqiu and Baker, Christopher CM and Li, Yuanheng and Popescu, Viorel D and Wang, Zhengyang and Wang, Jiaxin and Wang, Lin and Wu, Chunying and Hua, Chaolang and Yang, Zhongxing and others 2020. Large-scale quantification of vertebrate biodiversity in ailaoshan nature reserve from leech iDNA BioRxiv, 2020.
  18. Baker, Christopher CM and Castillo Vardaro, Jessica A and Doak, Daniel F and Pansu, Johan and Puissant, J{\'e}r{\'e}my and Pringle, Robert M and Tarnita, Corina E 2020. Spatial patterning of soil microbial communities created by fungus-farming termites Molecular ecology Vol. 29, No. 22, pp. 4487--4501, 2020.
  19. Wang, Kai and Wilder, Bryan and Perrault, Andrew and Tambe, Milind 2020. Automatically Learning Compact Quality-aware Surrogates for Optimization Problems arXiv preprint arXiv:2006.10815, 2020.
  20. Samajdar, Rhine and Ho, Wen Wei and Pichler, Hannes and Lukin, Mikhail D and Sachdev, Subir 2020. Complex density wave orders and quantum phase transitions in a model of square-lattice Rydberg atom arrays Physical review letters Vol. 124, No. 10, pp. 103601, 2020.
  21. Bitran, Amir and Jacobs, William M and Shakhnovich, Eugene 2020. Validation of DBFOLD: An efficient algorithm for computing folding pathways of complex proteins PLoS computational biology Vol. 16, No. 11, pp. e1008323, 2020.
  22. Freedman, Adam H and Gaspar, John M and Sackton, Timothy B 2020. Short paired-end reads trump long single-end reads for expression analysis BMC bioinformatics Vol. 21, No. 1, pp. 1--11, 2020.
  23. Cornelison, James and Ade, PAR and Ahmed, Zeeshan and Amiri, Mandana and Barkats, Denis and Thakur, R Basu and Bischoff, Colin and Bock, JJ and Boenish, Hans and Bullock, Eric and others 2020. Polarization Calibration of the BICEP3 CMB polarimeter at the South Pole Millimeter, Submillimeter, and Far-Infrared Detectors and Instrumentation for Astronomy X Vol. 11453, pp. 1145327, 2020.
  24. Flamant, Cedric and Protopapas, Pavlos and Sondak, David 2020. Solving Differential Equations Using Neural Network Solution Bundles arXiv preprint arXiv:2006.14372, 2020.
  25. Larson, Daniel T and Carr, Stephen and Tritsaris, Georgios A and Kaxiras, Efthimios 2020. Effects of lithium intercalation in twisted bilayer graphene Physical Review B Vol. 101, No. 7, pp. 075407, 2020.
  26. Prokopenko, Dmitry and Hecker, Julian and Kirchner, Rory and Chapman, Brad A and Hoffman, Oliver and Mullin, Kristina and Hide, Winston and Bertram, Lars and Laird, Nan and DeMeo, Dawn L and others 2020. Identification of novel Alzheimer’s disease loci using sex-specific family-based association analysis of whole-genome sequence data Scientific reports Vol. 10, No. 1, pp. 1--9, 2020.
  27. Lemon, Christopher M and Maher, Andrew G and Mazzotti, Anthony R and Powers, David C and Gonzalez, Miguel I and Nocera, Daniel G 2020. Multielectron C--H photoactivation with an Sb (v) oxo corrole Chemical Communications Vol. 56, No. 39, pp. 5247--5250, 2020.
  28. Ntampaka, Michelle and Eisenstein, Daniel J and Yuan, Sihan and Garrison, Lehman H 2020. A Hybrid Deep Learning Approach to Cosmological Constraints from Galaxy Redshift Surveys The Astrophysical Journal Vol. 889, No. 2, pp. 151, 2020.
  29. Johnson, Benjamin D and Conroy, Charlie and Naidu, Rohan P and Bonaca, Ana and Zaritsky, Dennis and Ting, Yuan-Sen and Cargile, Phillip A and Han, Jiwon Jesse and Speagle, Joshua S 2020. A Diffuse Metal-poor Component of the Sagittarius Stream Revealed by the H3 Survey The Astrophysical Journal Vol. 900, No. 2, pp. 103, 2020.
  30. McCulloch, Kyle J and Koenig, Kristen M 2020. Kr{\"u}ppel-like factor/specificity protein evolution in the Spiralia and the implications for cephalopod visual system novelties Proceedings of the Royal Society B Vol. 287, No. 1937, pp. 20202055, 2020.
  31. Zucker, Catherine and Speagle, Joshua S and Schlafly, Edward F and Green, Gregory M and Finkbeiner, Douglas P and Goodman, Alyssa and Alves, Jo{\~a}o 2020. A compendium of distances to molecular clouds in the Star Formation Handbook Astronomy \& Astrophysics Vol. 633, pp. A51, 2020.
  32. Zhu, Ziyan and Carr, Stephen and Massatt, Daniel and Luskin, Mitchell and Kaxiras, Efthimios 2020. Twisted trilayer graphene: a precisely tunable platform for correlated electrons Physical review letters Vol. 125, No. 11, pp. 116404, 2020.
  33. Wu, Xiao and Nethery, Rachel C and Sabath, Benjamin M and Braun, Danielle and Dominici, Francesca 2020. Exposure to air pollution and COVID-19 mortality in the United States MedRxiv, 2020.
  34. Wu, X and Braun, D and Schwartz, J and Kioumourtzoglou, MA and Dominici, FJSA 2020. Evaluating the impact of long-term exposure to fine particulate matter on mortality among the elderly Science advances Vol. 6, No. 29, pp. eaba5692, 2020.
  35. Bind, M-AC and Rubin, DB 2020. When possible, report a Fisher-exact P value and display its underlying null randomization distribution Proceedings of the National Academy of Sciences Vol. 117, No. 32, pp. 19151--19158, 2020.
  36. Wu, Xiao and Nethery, Rachel C and Sabath, MB and Braun, Danielle and Dominici, Francesca 2020. Air pollution and COVID-19 mortality in the United States: Strengths and limitations of an ecological regression analysis Science advances Vol. 6, No. 45, pp. eabd4049, 2020.
  37. Naidu, Rohan P and Conroy, Charlie and Bonaca, Ana and Johnson, Benjamin D and Ting, Yuan-Sen and Caldwell, Nelson and Zaritsky, Dennis and Cargile, Phillip A 2020. Evidence from the H3 Survey that the Stellar Halo is Entirely Comprised of Substructure The Astrophysical Journal Vol. 901, No. 1, pp. 48, 2020.
  38. Bonaca, Ana and Conroy, Charlie and Cargile, Phillip A and Naidu, Rohan P and Johnson, Benjamin D and Zaritsky, Dennis and Ting, Yuan-Sen and Caldwell, Nelson and Han, Jiwon Jesse and Van Dokkum, Pieter 2020. Timing the Early Assembly of the Milky Way with the H3 Survey The Astrophysical Journal Letters Vol. 897, No. 1, pp. L18, 2020.
  39. Rodriguez, Carl L and Kremer, Kyle and Grudi{\'c}, Michael Y and Hafen, Zachary and Chatterjee, Sourav and Fragione, Giacomo and Lamberts, Astrid and Martinez, Miguel AS and Rasio, Frederic A and Weatherford, Newlin and others 2020. GW190412 as a third-generation black hole merger from a super star cluster The Astrophysical Journal Letters Vol. 896, No. 1, pp. L10, 2020.
  40. Mocz, Philip and Fialkov, Anastasia and Vogelsberger, Mark and Becerra, Fernando and Shen, Xuejian and Robles, Victor H and Amin, Mustafa A and Zavala, Jes{\'u}s and Boylan-Kolchin, Michael and Bose, Sownak and others 2020. Galaxy formation with BECDM--II. Cosmic filaments and first galaxies Monthly Notices of the Royal Astronomical Society Vol. 494, No. 2, pp. 2027--2044, 2020.
  41. Alves, Jo{\~a}o and Zucker, Catherine and Goodman, Alyssa A and Speagle, Joshua S and Meingast, Stefan and Robitaille, Thomas and Finkbeiner, Douglas P and Schlafly, Edward F and Green, Gregory M 2020. A Galactic-scale gas wave in the solar neighbourhood Nature Vol. 578, No. 7794, pp. 237--239, 2020.
  42. Corbett, Eamon C and Bravo, Gustavo A and Schunck, Fabio and Naka, Luciano N and Silveira, Lu{\'\i}s F and Edwards, Scott V 2020. Evidence for the Pleistocene Arc Hypothesis from genome-wide SNPs in a Neotropical dry forest specialist, the Rufous-fronted Thornbird (Furnariidae: Phacellodomus rufifrons) Molecular Ecology Vol. 29, No. 22, pp. 4457--4472, 2020.
  43. Hosseinzadeh, Griffin and Dauphin, Frederick and Villar, V Ashley and Berger, Edo and Jones, David O and Challis, Peter and Chornock, Ryan and Drout, Maria R and Foley, Ryan J and Kirshner, Robert P and others 2020. Photometric Classification of 2315 Pan-STARRS1 Supernovae with Superphot The Astrophysical Journal Vol. 905, No. 2, pp. 93, 2020.
  44. Baum, Mark and Wordsworth, Robin 2020. Groundwater flow to Gale Crater in an episodically warm climate Journal of Geophysical Research: Planets Vol. 125, No. 8, pp. e2020JE006397, 2020.

2019 (19 publications)

  1. Austin Smith, Justin Riley, Muneeba Syed, Milan Kupcevic, Paul Edmon, Scott Yockel 2019. Exploring Untrusted Distributed Storage for High Performance Computing acm, 10.1145/3332186.3332224
  2. Phelan Yu, Lawrence W. Cheuk, Ivan Kozyryev, John M. Doyle 2019. A Scalable Quantum Computing Platform Using Symmetric-Top Molecules arXiv:1905.06439 [physics.atom-ph]
  3. Balthazar, B., Rodriguez, V.A. and Yin, X. 2019. Long string scattering in c= 1 string theory Journal of High Energy Physics, 2019(1), p.173.
  4. Schlafly, E.F., Meisner, A.M. and Green, G.M. 2019. The unWISE Catalog: Two Billion Infrared Sources from Five Years of WISE Imaging arXiv preprint arXiv:1901.03337.
  5. Tian, Y. and Kuang, Z. 2019. Why Does Deep Convection Have Different Sensitivities to Temperature Perturbations in the Lower versus Upper Troposphere? Journal of the Atmospheric Sciences, 76(1), pp.27-41.
  6. Hassan, N., Mattheakis, M. and Ding, M. 2019. Sensorless Node Architecture for Events detection in Self-Powered Nanosensor Networks Nano Communication Networks, 19, pp.1-9.
  7. Ma, Q., Xu, S.Y., Shen, H., MacNeill, D., Fatemi, V., Chang, T.R., Valdivia, A.M.M., Wu, S., Du, Z., Hsu, C.H. and Fang, S. 2019. Observation of the nonlinear Hall effect under time-reversal-symmetric conditions Nature, 565(7739), p.337.
  8. Häse, F., Galván, I.F., Aspuru-Guzik, A., Lindh, R. and Vacher, M. 2019. How machine learning can assist the interpretation of ab initio molecular dynamics simulations and conceptual understanding of chemistry Chemical Science
  9. Dagon, K. and Schrag, D.P. 2019. Quantifying the effects of solar geoengineering on vegetation Climatic Change, pp.1-17.
  10. Shultz, A.J. and Sackton, T.B. 2019. Immune genes are hotspots of shared positive selection across birds and mammals eLife, 8, p.e41815.
  11. Moreno, J., Torrey, P., Ellison, S.L., Patton, D.R., Hopkins, P.F., Bueno, M., Hayward, C.C., Narayanan, D., Keres, D., Bluck, A.A. and Hernquist, L. 2019. Interacting galaxies on FIRE-2: The connection between enhanced star formation and interstellar gas conten arXiv preprint arXiv:1902.02305.
  12. Monsalve, R.A., Fialkov, A., Bowman, J.D., Rogers, A.E., Mozdzen, T.J., Cohen, A., Barkana, R. and Mahesh, N. 2019. Results from EDGES High-Band: III. New Constraints on Parameters of the Early Universe arXiv preprint arXiv:1901.10943.
  13. Kreisch, C.D., Cyr-Racine, F.Y. and Doré, O. 2019. The Neutrino Puzzle: Anomalies, Interactions, and Cosmological Tensions arXiv preprint arXiv:1902.00534.
  14. Carr, S., Fang, S., Zhu, Z. and Kaxiras, E. 2019. Minimal model for low-energy electronic states of twisted bilayer graphene arXiv preprint arXiv:1901.03420.
  15. Larson, D., Fang, S., Chen, W., Coulter, J., Torrisi, S. and Carr, S. 2019. Strain-dependent ab-initio tight binding Hamiltonians for T-type transition metal dichalcogenides Bulletin of the American Physical Society.
  16. Larson, D., Fang, S., Chen, W., Coulter, J., Torrisi, S. and Carr, S. 2019. Strain-dependent ab-initio tight binding Hamiltonians for T-type transition metal dichalcogenide Bulletin of the American Physical Society
  17. Lynch, K.S., O'Connell, L.A., Louder, M.I., Balakrishnan, C.N. and Fischer, E.K. 2019. Understanding the Loss of Maternal Care in Avian Brood Parasites Using Preoptic Area Transcriptome Comparisons in Brood Parasitic and Non-parasitic Blackbirds G3: Genes, Genomes, Genetics, pp.g3-200992.
  18. Li, K., Jacob, D.J., Liao, H., Shen, L., Zhang, Q. and Bates, K.H. 2019. Anthropogenic drivers of 2013–2017 trends in summer surface ozone in China Proceedings of the National Academy of Sciences, 116(2), pp.422-427.
  19. Gaynor, S., Fagny, M., Lin, X., Platig, J. and Quackenbush, J. 2019. Connectivity of variants in eQTL networks dictates reproducibility and functionality bioRxiv, p.515551

2018 (74 publications)

  1. Suzgun, M., Belinkov Y., and Shieber, S. M. 2018. On Evaluating the Generalization of LSTM Models in Formal Languages arXiv:1811.01001v1
  2. Mattheakis, M., Tsironis, G.P. and Kaxiras, E. 2018. Electronic Branched Flow in Graphene with Random Potential: Theory and Machine Learning Prediction arXiv preprint arXiv:1801.08217.
  3. de Medeiros, B.A. and Farrell, B.D. 2018. Whole-genome amplification in double-digest RADseq results in adequate libraries but fewer sequenced loci PeerJ, 6, p.e5089
  4. Leja, J., Johnson, B.D., Conroy, C. and van Dokkum, P. 2018. Hot Dust in Panchromatic SED Fitting: Identification of Active Galactic Nuclei and Improved Galaxy Properties The Astrophysical Journal, 854(1), p.62.
  5. Muralidhar, P. and Veller, C. 2018. Sexual antagonism and the instability of environmental sex determination Nature ecology & evolution, p.1.
  6. Mocz, P., Lancaster, L., Fialkov, A. and Becerra, F. 2018. On the Schrodinger-Poisson--Vlasov-Poisson correspondence arXiv preprint arXiv:1801.03507.
  7. Wang, M., Branco, A.T. and Lemos, B. 2018. The Y chromosome modulates splicing and sex-biased intron retention rates in Drosophila Genetics, 208(3), pp.1057-1067.
  8. Hu, Z., Sackton, T.B., Edwards, S.V. and Liu, J.S. 2018. A hierarchical Bayesian model for detecting convergent rate changes of conserved noncoding elements on phylogenetic trees bioRxiv, p.260745.
  9. O'Connor, C.R., Hiebel, F., Chen, W., Kaxiras, E., Madix, R.J. and Friend, C. 2018. Identifying key descriptors in surface binding: Interplay of surface anchoring and intermolecular interactions for carboxylates on Au (110) Chemical Science.
  10. Cloutier, A., Sackton, T.B., Grayson, P., Clamp, M., Baker, A.J. and Edwards, S.V. 2018. Phylogenomic analyses resolve historically contentious relationships within the Palaeognathae in the presence of an empirical anomaly zone bioRxiv, p.262949.
  11. Cloutier, A., Sackton, T.B., Grayson, P., Clamp, M., Baker, A.J. and Edwards, S.V. 2018. Whole-genome analyses resolve the phylogeny of flightless birds (Palaeognathae) in the presence of an empirical anomaly zone bioRxiv, p.262949.
  12. Jinich, A., Sanchez-Lengeling, B., Ren, H., Goldford, J.E., Noor, E., Sanders, J.N., Segre, D. and Aspuru-Guzik, A. 2018. The thermodynamic landscape of carbon redox biochemistry bioRxiv, p.245811.
  13. Lunnan, R., Chornock, R., Berger, E., Jones, D.O., Rest, A., Czekala, I., Dittmann, J., Drout, M.R., Foley, R.J., Fong, W. and Kirshner, R.P. 2018. Hydrogen-poor Superluminous Supernovae from the Pan-STARRS1 Medium Deep Survey The Astrophysical Journal,852(2), p.81.
  14. Jinich, A., Sanchez-Lengeling, B., Ren, H., Harman, R. and Aspuru-Guzik, A. 2018. A mixed quantum chemistry/machine learning approach for the fast and accurate prediction of biochemical redox potentials and its large-scale application to 315,000 redox reactions bioRxiv, p.245357.
  15. Espeland, M., Breinholt, J., Willmott, K.R., Warren, A.D., Vila, R., Toussaint, E.F., Maunsell, S.C., Aduse-Poku, K., Talavera, G., Eastwood, R. and Jarzyna, M.A. 2018. A Comprehensive and Dated Phylogenomic Analysis of Butterflies Current Biology.
  16. Danehkar, A., Nowak, M.A., Lee, J.C., Kriss, G.A., Young, A.J., Hardcastle, M.J., Chakravorty, S., Fang, T., Neilsen, J., Rahoui, F. and Smith, R.K. 2018. The Ultra-Fast Outflow of the Quasar PG 1211+ 143 as viewed by time-averaged Chandra grating spectroscopy The Astrophysical Journal, 853(2), p.165.
  17. Perol, T., Gharbi, M. and Denolle, M. 2018. Convolutional neural network for earthquake detection and location Science Advances,4(2), p.e1700578.
  18. Green, G.M., Schlafly, E.F., Finkbeiner, D., Rix, H.W., Martin, N., Burgett, W., Draper, P.W., Flewelling, H., Hodapp, K., Kaiser, N. and Kudritzki, R.P. 2018. Galactic Reddening in 3D from Stellar Photometry-An Improved Map arXiv preprint arXiv:1801.03555.
  19. Metodiev, E.M. and Thaler, J. 2018. On the Topic of Jets arXiv preprint arXiv:1802.00008.
  20. Sackton, T.B., Grayson, P., Cloutier, A., Hu, Z., Liu, J.S., Wheeler, N.E., Gardner, P.P., Clarke, J.A., Baker, A.J., Clamp, M. and Edwards, S.V. 2018. Convergent regulatory evolution and the origin of flightlessness in palaeognathous birds BioRxiv, p.262584.
  21. Zhong, Q.Y., Gelaye, B., Smoller, J.W., Avillach, P., Cai, T. and Williams, M.A. 2018. Adverse obstetric outcomes during delivery hospitalizations complicated by suicidal behavior among US pregnant women PloS one,13(2), p.e0192943.
  22. Friedman, L.E., Zhong, Q.Y., Gelaye, B., Williams, M.A. and Peterlin, B.L. 2018. Association Between Migraine and Suicidal Behaviors: A Nationwide Study in the USA Headache: The Journal of Head and Face Pain,58(3), pp.371-380.
  23. Kim, S.I., De Medeiros, B.A., Byun, B.K., Lee, S., Kang, J.H., Lee, B. and Farrell, B.D. 2018. West meets east: How do rainforest beetles become circum-Pacific? Evolutionary origin of Callipogon relictus and allied species (Cerambycidae: Prioninae) in the New and Old Worlds Molecular phylogenetics and evolution.
  24. Danehkar, A. 2018. Bi-abundance ionization structure of the Wolf-Rayet planetary nebula PB 8 arXiv preprintarXiv:1801.00892.
  25. You, J.S., Fang, S., Xu, S.Y., Kaxiras, E. and Low, T. 2018. The Berry curvature dipole current in transition metal dichalcogenides family arXiv preprint arXiv:1805.02157.
  26. Hadden, S., Li, G., Payne, M.J. and Holman, M.J. 2018. Chaotic Dynamics of Trans-Neptunian Objects Perturbed by Planet Nine The Astronomical Journal,155(6), p.249.
  27. Carr, S., Fang, S., Jarillo-Herrero, P. and Kaxiras, E. 2018. Pressure dependence of the magic twist angle in graphene superlattices arXiv preprint arXiv:1806.05078.
  28. Patel, E., Besla, G., Mandel, K. and Sohn, S.T. 2018. Estimating the Mass of the Milky Way Using the Ensemble of Classical Satellite Galaxies The Astrophysical Journal,857(2), p.78.
  29. Zhu, Q., Vasiliev, E., Li, Y. and Jing, Y. 2018. Primordial black holes as dark matter: constraints from compact ultra-faint dwarfs Monthly Notices of the Royal Astronomical Society,476(1), pp.2-11.
  30. Lee, A., Green, G.M., Schlafly, E.F., Finkbeiner, D.P., Burgett, W., Chambers, K., Flewelling, H., Hodapp, K., Kaiser, N., Kudritzki, R.P. and Magnier, E. 2018. A Color-locus Method for Mapping RV Using Ensembles of Stars The Astrophysical Journal,854(2), p.79.
  31. Neagu, I.A., Olejarz, J., Freeman, M., Rosenbloom, D.I., Nowak, M.A. and Hill, A.L. 2018. Life cycle synchronization is a viral drug resistance mechanism PLoS computational biology,14(2), p.e1005947.
  32. Jones, D.O., Scolnic, D.M., Riess, A.G., Rest, A., Kirshner, R.P., Berger, E., Kessler, R., Pan, Y.C., Foley, R.J., Chornock, R. and Ortega, C.A. 2018. Measuring Dark Energy Properties with Photometrically Classified Pan-STARRS Supernovae. II. Cosmological Parameters The Astrophysical Journal,857(1), p.51.
  33. Yu, S. and Lemos, B. 2018. The long-range interaction map of ribosomal DNA arrays PLoS genetics,14(3), p.e1007258.
  34. Wang, G., Moffitt, J.R. and Zhuang, X. 2018. Multiplexed imaging of high-density libraries of RNAs with MERFISH and expansion microscopy Scientific reports,8(1), p.4847.
  35. Papamokos, G., Wudarczyk, J., Graf, R., Schollmeyer, D., Baumgarten, M., Müllen, K. and Floudas, G. 2018. Dipolar Relaxation in Functionalized Poly-p-phenylenes Bearing Ultrastrong Dipoles Perpendicular to the Backbone Macromolecules,51(9), pp.3330-3339.
  36. Fraser, K. and Schwartz, M.D. 2018. Jet Charge and Machine Learning arXiv preprint arXiv:1803.08066.
  37. Wong, W., Wenger, E.A., Hartl, D.L. and Wirth, D.F. 2018. Modeling the genetic relatedness of Plasmodium falciparum parasites following meiotic recombination and cotransmission PLoS computational biology,14(1), p.e1005923.
  38. Sundar, V., Gelbwaser-Klimovsky, D. and Aspuru-Guzik, A. 2018. Reproducing Quantum Probability Distributions at the Speed of Classical Dynamics: A New Approach for Developing Force-Field Functors The journal of physical chemistry letters,9(7), pp.1721-1727.
  39. Barutcu, A.R., Maass, P.G., Lewandowski, J.P., Weiner, C.L. and Rinn, J.L. 2018. A TAD boundary is preserved upon deletion of the CTCF-rich Firre locus Nature communications,9(1), p.1444.
  40. Arnold, B.J., Gutmann, M.U., Grad, Y.H., Sheppard, S.K., Corander, J., Lipsitch, M. and Hanage, W.P. 2018. Weak Epistasis May Drive Adaptation in Recombining Bacteria Genetics, pp.genetics-300662.
  41. Scolnic, D.M., Jones, D.O., Rest, A., Pan, Y.C., Chornock, R., Foley, R.J., Huber, M.E., Kessler, R., Narayan, G., Riess, A.G. and Rodney, S. 2018. The Complete Light-curve Sample of Spectroscopically Confirmed SNe Ia from Pan-STARRS1 and Cosmological Constraints from the Combined Pantheon Sample The Astrophysical Journal,859(2), p.101.
  42. Tuite, A.R., Rönn, M.M., Wolf, E.E., Gift, T.L., Chesson, H.W., Berruti, A., Galer, K., Menzies, N.A., Hsu, K., Salomon, J.A. and Tuite, A. 2018. Estimated impact of screening on gonorrhea epidemiology in the United States: insights from a mathematical model Sexually transmitted diseases.
  43. Häse, F., Roch, L.M., Kreisbeck, C. and Aspuru-Guzik, A. 2018. PHOENICS: A universal deep Bayesian optimizer arXiv preprint arXiv:1801.01469.
  44. Espeland, M., Breinholt, J., Willmott, K.R., Warren, A.D., Vila, R., Toussaint, E.F., Maunsell, S.C., Aduse-Poku, K., Talavera, G., Eastwood, R. and Jarzyna, M.A. 2018. A comprehensive and dated phylogenomic analysis of butterflies Current Biology,28(5), pp.770-778.
  45. Kaye, B., Stiehl, O., Foster, P.J., Shelley, M.J., Needleman, D.J. and Fürthauer, S. 2018. Measuring and modeling polymer concentration profiles near spindle boundaries argues that spindle microtubules regulate their own nucleation New Journal of Physics,20(5), p.055012.
  46. Bennett, D.I., Maly, P., Kreisbeck, C., van Grondelle, R. and Aspuru-Guzik, A. 2018. Mechanistic Regimes of Vibronic Transport in a Heterodimer and the Design Principle of Incoherent Vibronic Transport in Phycobiliproteins The journal of physical chemistry letters,9(10), pp.2665-2670.
  47. Bopp, S., Magistrado, P., Wong, W., Schaffner, S.F., Mukherjee, A., Lim, P., Dhorda, M., Amaratunga, C., Woodrow, C.J., Ashley, E.A. and White, N.J. 2018. Plasmepsin II–III copy number accounts for bimodal piperaquine resistance among Cambodian Plasmodium falciparum Nature communications,9(1), p.1769.
  48. Danehkar, A., Nowak, M.A., Lee, J.C., Kriss, G.A., Young, A.J., Hardcastle, M.J., Chakravorty, S., Fang, T., Neilsen, J., Rahoui, F. and Smith, R.K. 2018. The Ultra-Fast Outflow of the Quasar PG 1211+ 143 as Viewed by Time-Averaged Chandra Grating Spectroscopy The Astrophysical Journal,853(2), p.165.
  49. Schlafly, E.F., Green, G.M., Lang, D., Daylan, T., Finkbeiner, D.P., Lee, A., Meisner, A.M., Schlegel, D. and Valdes, F. 2018. The DECam Plane Survey: Optical photometry of two billion objects in the southern Galactic plane The Astrophysical Journal Supplement Series,234(2), p.39.
  50. Sihi, D., Davidson, E.A., Chen, M., Savage, K.E., Richardson, A.D., Keenan, T.F. and Hollinger, D.Y. 2018. Merging a mechanistic enzymatic model of soil heterotrophic respiration into an ecosystem model in two AmeriFlux sites of northeastern USA Agricultural and Forest MeteorologyVolume 252, 15 April 2018, Pages 155-166
  51. Bediako, D.K., Rezaee, M., Yoo, H., Larson, D.T., Zhao, S.F., Taniguchi, T., Watanabe, K., Brower-Thomas, T.L., Kaxiras, E. and Kim, P. 2018. Heterointerface effects in the electrointercalation of van der Waals heterostructures Nature,558(7710), p.425.
  52. Kim, C., Daniels, M., Li, Y., Milbury, K. and Cohen, L. 2018. A Bayesian semiparametric latent variable approach to causal mediation Statistics in medicine,37(7), pp.1149-1161.
  53. Holman, M.J., Payne, M.J., Fraser, W., Lacerda, P., Bannister, M.T., Lackner, M., Chen, Y.T., Lin, H.W., Smith, K.W., Kokotanekova, R. and Young, D. 2018. A dwarf planet class object in the 21: 5 resonance with Neptune The Astrophysical Journal Letters,855(1), p.L6.
  54. O'Connor, C.R., Hiebel, F., Chen, W., Kaxiras, E., Madix, R.J. and Friend, C.M. 2018. Identifying key descriptors in surface binding: interplay of surface anchoring and intermolecular interactions for carboxylates on Au (110) Chemical science,9(15), pp.3759-3766.
  55. Munro, C., Siebert, S., Zapata, F., Howison, M., Serrano, A.D., Church, S.H., Goetz, F.E., Pugh, P.R., Haddock, S.H. and Dunn, C.W. 2018. Improved phylogenetic resolution within Siphonophora (Cnidaria) with implications for trait evolution Molecular Phylogenetics and Evolution.
  56. Cloutier, A., Sackton, T.B., Grayson, P., Edwards, S.V. and Baker, A.J. 2018. First nuclear genome assembly of an extinct moa species, the little bush moa (Anomalopteryx didiformis) bioRxiv, p.262816.
  57. Carr, S., Massatt, D., Luskin, M. and Kaxiras, E. 2018. Duality between atomic configurations and Bloch states in twisted 2D bilayers arXiv preprint arXiv:1803.01242.
  58. Clements, T. and Denolle, M.A. 2018. Tracking Groundwater Levels using the Ambient Seismic Field Geophysical Research Letters. 45:13, 6459-6465
  59. Metodiev, E.M. and Thaler, J. 2018. On the topic of jets arXiv preprint arXiv:1802.00008.
  60. Larson, D.T. and Kaxiras, E. 2018. Raman Spectrum of CrI 3: an ab-initio study.arXiv preprint arXiv:1803.10825.
  61. Maier, M., Mattheakis, M., Kaxiras, E., Luskin, M. and Margetis, D. 2018. Universal behavior of a dispersive Dirac cone in gradient-index plasmonic metamaterials Physical Review B,97(3), p.035307.
  62. Gómez-Bombarelli, R., Wei, J.N., Duvenaud, D., Hernández-Lobato, J.M., Sánchez-Lengeling, B., Sheberla, D., Aguilera-Iparraguirre, J., Hirzel, T.D., Adams, R.P. and Aspuru-Guzik, A. 2018. Automatic chemical design using a data-driven continuous representation of molecules ACS central science,4(2), pp.268-276.
  63. Carr, S., Massatt, D., Torrisi, S.B., Cazeaux, P., Luskin, M. and Kaxiras, E. 2018. Relaxation and Domain Formation in Incommensurate 2D Heterostructures arXiv preprint arXiv:1805.06972.
  64. Lunnan, R., Chornock, R., Berger, E., Jones, D.O., Rest, A., Czekala, I., Dittmann, J., Drout, M.R., Foley, R.J., Fong, W. and Kirshner, R.P. 2018. Hydrogen-poor superluminous supernovae from the Pan-STARRS1 Medium Deep Survey The Astrophysical Journal,852(2), p.81.
  65. Boulais, É., Sawaya, N.P., Veneziano, R., Andreoni, A., Banal, J.L., Kondo, T., Mandal, S., Lin, S., Schlau-Cohen, G.S., Woodbury, N.W. and Yan, H. 2018. Programmed coherent coupling in a synthetic DNA-based excitonic circuit Nature materials,17(2), p.159.
  66. Babcock, H.P. 2018. Multiplane and Spectrally-Resolved Single Molecule Localization Microscopy with Industrial Grade CMOS cameras Scientific reports,8(1), p.1726.
  67. Komiske, P.T., Metodiev, E.M., Nachman, B. and Schwartz, M.D. 2018. Learning to classify from impure samples arXiv preprint arXiv:1801.10158. Info: https://doi.org/10.1103/PhysRevLett.120.241602
  68. Mattheakis, M., Tsironis, G.P. and Kaxiras, E. 2018. Emergence and dynamical properties of stochastic branching in the electronic flows of disordered Dirac solids EPL (Europhysics Letters),122(2), p.27003.
  69. Lau, M., Ellison, A.M., Nguyen, A.D., Penick, C., DeMarco, B., Gotelli, N.J., Sanders, N., Dunn, R. and Cahan, S.H. 2018. Expanded view of the ecological genomics of ant responses to climate change bioRxiv, p.302679.
  70. Zhang, Y., Kim, S., Feng, G., Wang, Y., Liu, L., Ceder, G. and Li, X. 2018. The Interaction between Cu and Fe in P2-Type NaxTMO2 Cathodes for Advanced Battery Performance Journal of The Electrochemical Society,165(7), pp.A1184-A1192.
  71. Puri, A.W., Mevers, E., Ramadhar, T.R., Petras, D., Liu, D., Piel, J., Dorrestein, P.C., Greenberg, E.P., Lidstrom, M.E. and Clardy, J. 2018. Tundrenone: An Atypical Secondary Metabolite from Bacteria with Highly Restricted Primary Metabolism Journal of the American Chemical Society,140(6), pp.2002-2006.
  72. Gu, M., Conroy, C. and Brammer, G. 2018. Coordinated Assembly of Brightest Cluster Galaxies arXiv preprint arXiv:1805.04520.
  73. Liu, S.H., Bobb, J.F., Claus Henn, B., Schnaas, L., Tellez‐Rojo, M.M., Gennings, C., Arora, M., Wright, R.O., Coull, B.A. and Wand, M.P. 2018. Modeling the health effects of time‐varying complex environmental mixtures: Mean field variational Bayes for lagged kernel machine regression Environmetrics, p.e2504.
  74. Mattheakis, M., Tsironis, G. and Kaxiras, E. 2018. Electronic Branched Flow in Graphene and Dirac Materials Bulletin of the American Physical Society.

2017 (59 publications)

  1. Mehr, S. A., Kotler, J., Howard, R. M., Haig, D., & Krasnow, M. M. 2017. Genomic imprinting is implicated in the psychology of music Psychological Science, 28(10), 1455–1467
  2. Di, Q., Rowland, S., Koutrakis, P. and Schwartz, J. 2017. A hybrid model for spatially and temporally resolved ozone exposures in the continental United States Journal of the Air & Waste Management Association, 67(1), pp.39-52.
  3. Levin, B.J., Huang, Y.Y., Peck, S.C., Wei, Y., Martínez-del Campo, A., Marks, J.A., Franzosa, E.A., Huttenhower, C. and Balskus, E.P. 2017. A prominent glycyl radical enzyme in human gut microbiomes metabolizes trans-4-hydroxy-l-proline Science355:eaai8386.
  4. Andam, C.P., Mitchell, P.K., Callendrello, A., Chang, Q., Corander, J., Chaguza, C., McGee, L., Beall, B.W. and Hanage, W.P. 2017. Genomic epidemiology of penicillin non-susceptible pneumococci with non-vaccine serotypes causing invasive disease in the USA Journal of Clinical Microbiology, pp.JCM-02453.
  5. Zhou, Q., Sun, X., Xia, X., Fan, Z., Luo, Z., Zhao, S., Shakhnovich, E. and Liang, H. 2017. Exploring the Mutational Robustness of Nucleic Acids by Searching Genotype Neighborhoods in Sequence Space The journal of physical chemistry letters,8(2), pp.407-414.
  6. Jones, D.O., Scolnic, D.M., Riess, A.G., Kessler, R., Rest, A., Kirshner, R.P., Berger, E., Ortega, C.A., Foley, R.J., Chornock, R. and Challis, P.J. 2017. Measuring the Properties of Dark Energy with Photometrically Classified Pan-STARRS Supernovae. I. Systematic Uncertainty from Core-collapse Supernova Contamination The Astrophysical Journal,843(6), p.23pp.
  7. Mocz, P., Vogelsberger, M., Robles, V., Zavala, J., Boylan-Kolchin, M. and Hernquist, L. 2017. Galaxy Formation with BECDM: I. Turbulence and relaxation of idealised haloes arXiv preprint arXiv:1705.05845.
  8. Mattheakis, M., Tsironis, G.P. and Kaxiras, E. 2017. Graphene and active metamaterials: theoretical methods and physical properties arXiv preprint arXiv:1704.01912.
  9. Tanaka, H. and Brenner, M.P. 2017. Hot particles attract in a cold bath Physical Review Fluids,2(4), p.043103.
  10. Chotibut, T., Nelson, D.R. and Succi, S. 2017. Striated populations in disordered environments with advection Physica A: Statistical Mechanics and its Applications,465, pp.500-514.
  11. Bendesky, A., Kwon, Y.M., Lassance, J.M., Lewarch, C.L., Yao, S., Peterson, B.K., He, M.X., Dulac, C. and Hoekstra, H.E. 2017. The genetic basis of parental care evolution in monogamous mice Nature,544(7651), pp.434-439.
  12. Torrey, P., Wellons, S., Ma, C.P., Hopkins, P.F. and Vogelsberger, M. 2017. Forward and backward galaxy evolution in comoving cumulative number density space Monthly Notices of the Royal Astronomical Society,467(4), pp.4872-4885.
  13. Andam, C.P., Mitchell, P.K., Callendrello, A., Chang, Q., Corander, J., Chaguza, C., McGee, L., Beall, B.W. and Hanage, W.P. 2017. Genomic Epidemiology of Penicillin-Nonsusceptible Pneumococci with Nonvaccine Serotypes Causing Invasive Disease in the United States Journal of clinical microbiology,55(4), pp.1104-1115.
  14. Speagle, J.S. and Eisenstein, D.J. 2017. Deriving photometric redshifts using fuzzy archetypes and self-organizing maps–II. Implementation Monthly Notices of the Royal Astronomical Society,469(1), pp.1205-1224.
  15. Kingsley, E.P., Kozak, K.M., Pfeifer, S.P., Yang, D.S. and Hoekstra, H.E. 2017. The ultimate and proximate mechanisms driving the evolution of long tails in forest deer mice Evolution,71(2), pp.261-273.
  16. Childs, L.M. and Prosper, O.F. 2017. Simulating within-vector generation of the malaria parasite diversity PloS one,12(5), p.e0177941.
  17. Rosenfield, P., Girardi, L., Williams, B.F., Johnson, L.C., Dolphin, A., Bressan, A., Weisz, D., Dalcanton, J.J., Fouesneau, M. and Kalirai, J. 2017. A New Approach to Convective Core Overshooting: Probabilistic Constraints from Color–Magnitude Diagrams of LMC Clusters The Astrophysical Journal,841(2), p.69.
  18. Safarzadeh, M., Hayward, C.C. and Ferguson, H.C. 2017. The IRX–β Relation: Insights from Simulations The Astrophysical Journal,840(1), p.15.
  19. Debroise, T., Shakhnovich, E.I. and Chéron, N. 2017. A Hybrid Knowledge-Based and Empirical Scoring Function for Protein–Ligand Interaction: SMoG2016 Journal of Chemical Information and Modeling,57(3), pp.584-593.
  20. Wang, M. and Lemos, B. 2017. Genetic context and proliferation determine contrasting patterns of copy number amplification and loss for 5S and 45S ribosomal DNA arrays in cancer bioRxiv, p.154120.
  21. Hitchings, M.D.T., Grais, R.F. and Lipsitch, M. 2017. Using simulation to aid trial design: Ring-vaccination trials PLoS neglected tropical diseases,11(3), p.e0005470.
  22. Mostame, S., Huh, J., Kreisbeck, C., Kerman, A.J., Fujita, T., Eisfeld, A. and Aspuru-Guzik, A. 2017. Emulation of complex open quantum systems using superconducting qubits Quantum Information Processing,16(2), p.44.
  23. Lin, Y.H., Shao, S.H., Wang, Y. and Yin, X. 2017. (2, 2) superconformal bootstrap in two dimensions Journal of High Energy Physics,2017(5), p.112.
  24. Hull, C.L., Mocz, P., Burkhart, B., Goodman, A.A., Girart, J.M., Cortés, P.C., Hernquist, L., Springel, V., Li, Z.Y. and Lai, S.P. 2017. Unveiling the Role of the Magnetic Field at the Smallest Scales of Star Formation arXiv preprint arXiv:1706.03806.
  25. DeFelippis, D., Genel, S., Bryan, G.L. and Fall, S.M. 2017. The Impact of Galactic Winds on the Angular Momentum of Disk Galaxies in the Illustris Simulation The Astrophysical Journal,841(1), p.16.
  26. Arnold, B.J., Gutmann, M., Grad, Y., Sheppard, S.K., Corander, J., Lipsitch, M. and Hanage, W.P. 2017. Weak epistasis may drive adaptation in recombining bacteria bioRxiv, p.119958.
  27. Portillo, S.K., Lee, B.C., Daylan, T. and Finkbeiner, D.P. 2017. Improved Point Source Detection in Crowded Fields using Probabilistic Cataloging arXiv preprint arXiv:1703.01303.
  28. Liu, X. 2017. Deep Recurrent Neural Network for Protein Function Prediction from Sequence arXiv preprint arXiv:1701.08318.
  29. Schlauch, D., Fier, H. and Lange, C. 2017. Identification of genetic outliers due to sub-structure and cryptic relationships Bioinformatics, p.btx109.
  30. Todd, J.G., Kain, J.S. and de Bivort, B.L. 2017. Systematic exploration of unsupervised methods for mapping behavior Physical Biology,14(1), p.015002.
  31. Baker, C.C., Martins, D.J., Pelaez, J.N., Billen, J.P., Pringle, A., Frederickson, M.E. and Pierce, N.E. 2017. Distinctive fungal communities in an obligate African ant-plant mutualism. In Proc. R. Soc. B(Vol. 284, No. 1850, p. 20162501). The Royal Society.
  32. Kaye, B., Foster, P.J., Yoo, T.Y. and Needleman, D.J. 2017. Developing and testing a Bayesian analysis of fluorescence lifetime measurements PloS one,12(1), p.e0169337.
  33. Bitran, A., Chiang, W.Y., Levine, E. and Prentiss, M. 2017. Mechanisms of fast and stringent search in homologous pairing of double-stranded DNA PLoS computational biology,13(3), p.e1005421.
  34. Reiter, J.G., Makohon-Moore, A.P., Gerold, J.M., Bozic, I., Chatterjee, K., Iacobuzio-Donahue, C.A., Vogelstein, B. and Nowak, M.A. 2017. Reconstructing metastatic seeding patterns of human cancers Nature Communications,8.
  35. Lau, M.K., Baiser, B., Northrop, A., Gotelli, N.J. and Ellison, A.M. 2017. Regime shifts, alternative states and hysteresis in the Sarracenia microecosystem bioRxiv, p.087296.
  36. Valleau, S., Studer, R.A., Häse, F., Kreisbeck, C., Saer, R.G., Blankenship, R.E., Shakhnovich, E.I. and Aspuru-Guzik, A. 2017. Absence of selection for quantum coherence in the Fenna-Matthews-Olson complex: a combined evolutionary and excitonic study arXiv preprint arXiv:1705.01537.
  37. Blau, S.M., Bennett, D.I., Kreisbeck, C., Scholes, G.D. and Aspuru-Guzik, A. 2017. Local protein solvation drives direct down-conversion in phycobiliprotein PC645 via incoherent vibronic transport arXiv preprint arXiv:1704.05449.
  38. Di, Q., Wang, Y., Zanobetti, A., Wang, Y., Koutrakis, P., Choirat, C., Dominici, F. and Schwartz, J.D. 2017. Air Pollution and Mortality in the Medicare Population New England Journal of Medicine,376(26), pp.2513-2522.
  39. Zhu, Q., Smith, B. and Hernquist, L. 2017. Gas Cooling in Hydrodynamic Simulations with An Exact Time Integration Scheme Monthly Notices of the Royal Astronomical Society.
  40. Sackton, T.B., Lazzaro, B.P., and Clark, A.G. 2017. Rapid expansion of immune-related gene families in the house fly, Musca domestica Molecular biology and evolution34 (4): 857.
  41. Valagiannopoulos, C.A., Mattheakis, M., Shirodkar, S.N. and Kaxiras, E. 2017. Manipulating polarized light with a planar slab of Black Phosphorus arXiv preprint arXiv:1703.06383.
  42. Federico Marinacci, Mark Vogelsberger, Rüdiger Pakmor, Paul Torrey, Volker Springel, Lars Hernquist, Dylan Nelson, Rainer Weinberger, Annalisa Pillepich, Jill Naiman, Shy Genel. 2017. First results from the IllustrisTNG simulations: radio haloes and magnetic fields arXiv preprint arXiv:1707.03396v1
  43. Volker Springel, Rüdiger Pakmor, Annalisa Pillepich, Rainer Weinberger, Dylan Nelson, Lars Hernquist, Mark Vogelsberger, Shy Genel, Paul Torrey, Federico Marinacci, Jill Naiman. 2017. First results from the IllustrisTNG simulations: matter and galaxy clustering arXiv preprintarXiv:1707.03397v1
  44. Perol, T., Gharbi, M. and Denolle, M. 2017. Convolutional Neural Network for Earthquake Detection and Location arXiv preprintarXiv:1702.02073.Vancouver
  45. Sensoy, M.G., Vinichenko, D., Chen, W., Friend, C.M. and Kaxiras, E. 2017. Strain effects on the behavior of isolated and paired sulfur vacancy defects in monolayer MoS 2 Physical Review B, 95(1), p.014106.
  46. Roland, A.B., Santos, J.C., Carriker, B.C., Caty, S.N., Tapia, E.E., Coloma, L.A. and O'Connell, L.A. 2017. Radiation of the polymorphic Little Devil poison frog (Oophaga sylvatica) in Ecuador Ecology and Evolution.
  47. Haehn, D., Hoffer, J., Matejek, B., Suissa-Peleg, A., Al-Awami, A.K., Kamentsky, L., Gonda, F., Meng, E., Zhang, W., Schalek, R. and Wilson, A. 2017. August. Scalable Interactive Visualization for Connectomics Informatics(Vol. 4, No. 3, p. 29). Multidisciplinary Digital Publishing Institute.
  48. Babcock, H. 2017. Multiplane and Spectrally-Resolved Single Molecule Localization Microscopy with Industrial Grade CMOS Cameras bioRxiv, p.186544.
  49. Hopkins, M., Mitzenmacher, M. and Wagner-Carena, S. 2017. Simulated Annealing for JPEG Quantization arXiv preprintarXiv:1709.00649.
  50. Grånäs, O., Kolesov, G. and Kaxiras, E. 2017. Impact of Vibrations and Electronic Coherence on Electron Transfer in Flat Molecular Wires MRS Advances, 2(14), pp.811-816.
  51. Romero, J., Babbush, R., McClean, J.R., Hempel, C., Love, P. and Aspuru-Guzik, A. 2017. Strategies for quantum computing molecular energies using the unitary coupled cluster ansatz arXiv preprintarXiv:1701.02691.
  52. Di, Q., Wang, Y., Zanobetti, A., Wang, Y., Koutrakis, P., Choirat, C., Dominici, F. and Schwartz, J.D. 2017. Air pollution and mortality in the Medicare population New England Journal of Medicine, 376(26), pp.2513-2522.
  53. Schwentner, M., Combosch, D.J., Nelson, J.P. and Giribet, G. 2017. A Phylogenomic Solution to the Origin of Insects by Resolving Crustacean-Hexapod Relationships Current Biology.
  54. Levin, B.J., Huang, Y.Y., Peck, S.C., Wei, Y., Martínez-del Campo, A., Marks, J.A., Franzosa, E.A., Huttenhower, C. and Balskus, E.P. 2017. A prominent glycyl radical enzyme in human gut microbiomes metabolizes trans-4-hydroxy-L-proline Science, 355(6325), p.eaai8386.
  55. Tigano, A., Sackton, T.B. and Friesen, V.L. 2017. Assembly and RNA‐free annotation of highly heterozygous genomes: The case of the thick‐billed murre (Uria lomvia) Molecular Ecology Resources.
  56. Jiang, X., Shao, L., Zhang, S.X., Yi, X., Wiersig, J., Wang, L., Gong, Q., Lončar, M., Yang, L. and Xiao, Y.F. 2017. Chaos-assisted broadband momentum transformation in optical microresonators. Science, 358(6361), pp.344-347 Mathis, M.W., Mathis, A. and Uchida, N., 2017. Somatosensory cortex plays an essential role in forelimb motor adaptation in mice.Neuron,93(6), pp.1493-1503.
  57. Komiske, P.T., Metodiev, E.M., Nachman, B. and Schwartz, M.D. 2017. Pileup Mitigation with Machine Learning (PUMML) arXiv preprint arXiv:1707.08600. Info: https://doi.org/10.1007/JHEP12%282017%29051
  58. Carr, S., Massatt, D., Fang, S., Cazeaux, P., Luskin, M. and Kaxiras, E. 2017. Twistronics: Manipulating the electronic properties of two-dimensional layered structures through their twist angle Physical Review B,95(7), p.075420.
  59. DeVries, P.M., Thompson, T.B. and Meade, B.J. 2017. Enabling large‐scale viscoelastic calculations via neural network acceleration Geophysical Research Letters,44(6), pp.2662-2669.

2016 (54 publications)

  1. Cheron, N., Serohijos, A.W.R., Choi, J.M., and Shakhnovich, E. I. 2016. Evolutionary dynamics of viral escape under antibodies stress: A biophysical model. Protein Science, 25, pp.1332.
  2. Reis, S A, Ghosh, B, Hendricks, J A, Szantai-Kis, D M, Tork, L, Ross, K N, Lamb, J, Read-Button, W, Zheng, B, Wang, H, Salthouse, C, Haggarty, S J, and Mazitschek, R. 2016. Light-controlled modulation of gene expression by chemical optoepigenetic probes Nature Chemical BiologyPublished online 14 March 2016.
  3. Bogiatzis, P., Ishii, M., and Davis, T. A. 2016. Toward using direct methods in seismic tomography: Computation of the full resolution matrix using high performance computing and sparse QR factorization Geophys. J. Int.first published online February 8, 2016.
  4. Jakob Wudarczyk, Dr. George Papamokos, Vasilis Margaritis, Dr. Dieter Schollmeyer, Dr. Felix Hinkel, Prof. Dr. Martin Baumgarten, Prof. Dr. George Floudas, Prof. Dr. Klaus Müllen 2016. Hexasubstituted Benzenes with Ultrastrong Dipole Moments Angewandte Chemie Int.first published February 2, 2016.
  5. Fernández, R., Edgecombe, G.D. & Giribet, G. 2016. Exploring phylogenetic relationships within Myriapoda and the effects of matrix composition and occupancy on phylogenomic reconstruction Systematic Biology, in press.
  6. Phoebe M. R. DeVries, Plamen G. Krastev, and Brendan J. Meade 2016. Geodetically constrained models of viscoelastic stress transferand earthquake triggering along the North Anatolian fault Geochemistry, Geophysics, Geosystems/AGUfirst published June 20, 2016.
  7. Paul Torrey, Sarah Wellons, Chung-Pei Ma, Philip F. Hopkins, and Mark Vogelsberger 2016. Forward and backward galaxy evolution in comoving number density space Monthly Notices of the Royal Astronomical Societyfirst published June 24, 2016.
  8. Alexander Mathis, Dan Rokni, Vikrant Kapoor, Matthias Bethge, Venkatesh N. Murthy 2016. Reading Out Olfactory Receptors: Feedforward Circuits Detect Odors in Mixtures without Demixing Neuronfirst published September, 7, 2016.
  9. Fujita, T., Atahan-Evrenk, S., Sawaya, N.P. and Aspuru-Guzik, A. 2016. Coherent Dynamics of Mixed Frenkel and Charge-Transfer Excitons in Dinaphtho [2, 3-b: 2′ 3′-f] thieno [3, 2-b]-thiophene Thin Films: The Importance of Hole Delocalization The journal of physical chemistry letters,7(7), pp.1374-1380.
  10. Park, H.J., So, M.C., Gosztola, D., Wiederrecht, G.P., Emery, J.D., Martinson, A.B., Er, S., Wilmer, C.E., Vermeulen, N.A., Aspuru-Guzik, A. and Stoddart, J.F. 2016. Layer-by-Layer Assembled Films of Perylene Diimide-and Squaraine-Containing Metal–Organic Framework-like Materials: Solar Energy Capture and Directional Energy Transfer ACS Applied Materials & Interfaces,8(38), pp.24983-24988.
  11. Wei, J.N., Duvenaud, D. and Aspuru-Guzik, A. 2016. Neural networks for the prediction of organic chemistry reactions ACS Central Science,2(10), pp.725-732.
  12. Gelbwaser-Klimovsky, D., Saikin, S.K., Goldsmith, R.H. and Aspuru-Guzik, A. 2016. Optical Spectra of p-Doped PEDOT Nanoaggregates Provide Insight into the Material Disorder ACS Energy Letters,1(6), pp.1100-1105.
  13. Pyzer-Knapp, E.O., Simm, G.N. and Guzik, A.A. 2016. A Bayesian approach to calibrating high-throughput virtual screening results and application to organic photovoltaic materials Materials Horizons,3(3), pp.226-233.
  14. Blood-Forsythe, M.A., Markovich, T., DiStasio, R.A., Car, R. and Aspuru-Guzik, A. 2016. Analytical nuclear gradients for the range-separated many-body dispersion model of noncovalent interactions Chemical Science,7(3), pp.1712-1728.
  15. Häse, F., Valleau, S., Pyzer-Knapp, E. and Aspuru-Guzik, A. 2016. Machine learning exciton dynamics Chemical Science.
  16. Lin, K., Gómez-Bombarelli, R., Beh, E.S., Tong, L., Chen, Q., Valle, A., Aspuru-Guzik, A., Aziz, M.J. and Gordon, R.G. 2016. A redox-flow battery with an alloxazine-based organic electrolyte Nature Energy,1, p.16102.
  17. Gómez-Bombarelli, R., Aguilera-Iparraguirre, J., Hirzel, T.D., Duvenaud, D., Maclaurin, D., Blood-Forsythe, M.A., Chae, H.S., Einzinger, M., Ha, D.G., Wu, T. and Markopoulos, G. 2016. Design of efficient molecular organic light-emitting diodes by a high-throughput virtual screening and experimental approach Nature Materials,15(10), pp.1120-1127.
  18. Lopez, S.A., Pyzer-Knapp, E.O., Simm, G.N., Lutzow, T., Li, K., Seress, L.R., Hachmann, J. and Aspuru-Guzik, A. 2016. The Harvard organic photovoltaic dataset Scientific Data,3.
  19. Ma, D., and Z. Kuang. 2016. A mechanism‐denial study on the Madden‐Julian Oscillation with reduced interference from mean state changes Geophysical Research Letters43.6 (2016): 2989-2997.
  20. Hassanzadeh, P. and Kuang, Z. 2016. The linear response function of an idealized atmosphere. Part I: Construction using Green’s functions and applications Journal of the Atmospheric Sciences,73(9), pp.3423-3439.
  21. Hassanzadeh, P. and Kuang, Z. 2016. The Linear Response Function of an Idealized Atmosphere. Part II: Implications for the Practical Use of the Fluctuation–Dissipation Theorem and the Role of Operator’s Nonnormality Journal of the Atmospheric Sciences,73(9), pp.3441-3452.
  22. Ma, D., Hassanzadeh, P. and Kuang, Z. 2016. Quantifying the eddy-jet feedback strength of the annular mode in an idealized GCM and the reanalysis data Journal of the Atmospheric Sciences, (2016).
  23. Moore, M., Blossey, P.N., Muhlbauer, A. and Kuang, Z. 2016. Microphysical controls on the isotopic composition of wintertime orographic precipitation Journal of Geophysical Research: Atmospheres, 121(12), pp.7235-7253.
  24. Nie, J., Kuang, Z., Jacob, D.J. and Guo, J. 2016. Representing effects of aqueous phase reactions in shallow cumuli in global models Journal of Geophysical Research: Atmospheres, 121(10), pp.5769-5787.
  25. Singh, M.S. and Kuang, Z. 2016. Exploring the role of eddy momentum fluxes in determining the characteristics of the equinoctial Hadley circulation: Fixed-SST simulations Journal of the Atmospheric Sciences, 73(6), pp.2427-2444.
  26. Singh, M.S., Kuang, Z. and Tian, Y. 2016. Eddy influences on the strength of the Hadley circulation: dynamic and thermodynamic perspectives Journal of the Atmospheric Sciences, (2016).
  27. Tian, Y. and Kuang, Z. 2016. Dependence of entrainment in shallow cumulus convection on vertical velocity and distance to cloud edge Geophysical Research Letters, 43(8), pp.4056-4065.
  28. Torri, G. and Kuang, Z. 2016. Rain evaporation and moist patches in tropical boundary layers Geophysical Research Letters, 43(18), pp.9895-9902.
  29. Torri, G. and Kuang, Z. 2016. A Lagrangian study of precipitation-driven downdrafts Journal of the Atmospheric Sciences, 73(2), pp.839-854.
  30. Kannan, R., Vogelsberger, M., Stinson, G.S., Hennawi, J.F., Marinacci, F., Springel, V. and Maccio, A.V. 2016. Galaxy formation with local photoionization feedback–II. Effect of X-ray emission from binaries and hot gas Monthly Notices of the Royal Astronomical Society, 458(3), pp.2516-2529.
  31. Griffen, B.F., Ji, A.P., Dooley, G.A., Gómez, F.A., Vogelsberger, M., O’Shea, B.W. and Frebel, A. 2016. The Caterpillar Project: A Large Suite of Milky Way Sized Halos The Astrophysical Journal, 818(1), p.10.
  32. Popa, C., Naoz, S., Marinacci, F. and Vogelsberger, M. 2016. Gas-rich and gas-poor structures through the stream velocity effect Monthly Notices of the Royal Astronomical Society, 460(2), pp.1625-1639.
  33. Vogelsberger, M., Zavala, J., Cyr-Racine, F.Y., Pfrommer, C., Bringmann, T. and Sigurdson, K. 2016. ETHOS–an effective theory of structure formation: dark matter physics as a possible explanation of the small-scale CDM problems Monthly Notices of the Royal Astronomical Society, 460(2), pp.1399-1416.
  34. Nelson, D., Genel, S., Pillepich, A., Vogelsberger, M., Springel, V. and Hernquist, L. 2016. Zooming in on accretion–I. The structure of halo gas Monthly Notices of the Royal Astronomical Society, 460(3), pp.2881-2904.
  35. Taylor, C., Boylan-Kolchin, M., Torrey, P., Vogelsberger, M. and Hernquist, L. 2016. The mass profile of the Milky Way to the virial radius from the Illustris simulation Monthly Notices of the Royal Astronomical Society, 461(4), pp.3483-3493.
  36. Nierenberg, A.M., Treu, T., Menci, N., Lu, Y., Torrey, P. and Vogelsberger, M. 2016. The missing satellite problem in 3D Monthly Notices of the Royal Astronomical Society, 462(4), pp.4473-4481.Vancouver
  37. Mocz, P., Pakmor, R., Springel, V., Vogelsberger, M., Marinacci, F. and Hernquist, L. 2016. A moving mesh unstaggered constrained transport scheme for magnetohydrodynamics Monthly Notices of the Royal Astronomical Society, 463(1), pp.477-488.
  38. McKinnon, R., Torrey, P. and Vogelsberger, M. 2016. Dust formation in Milky Way-like galaxies Monthly Notices of the Royal Astronomical Society, 457(4), pp.3775-3800.
  39. Kannan, R., Springel, V., Pakmor, R., Marinacci, F. and Vogelsberger, M. 2016. Accurately simulating anisotropic thermal conduction on a moving mesh Monthly Notices of the Royal Astronomical Society, 458(1), pp.410-424.
  40. Rodriguez-Gomez, V., Pillepich, A., Sales, L.V., Genel, S., Vogelsberger, M., Zhu, Q., Wellons, S., Nelson, D., Torrey, P., Springel, V. and Ma, C.P. 2016. The stellar mass assembly of galaxies in the Illustris simulation: growth by mergers and the spatial distribution of accreted stars Monthly Notices of the Royal Astronomical Society, 458(3), pp.2371-2390.
  41. Rodriguez-Gomez, V., Sales, L.V., Genel, S., Pillepich, A., Zjupa, J., Nelson, D., Griffen, B., Torrey, P., Snyder, G.F., Vogelsberger, M. and others 2016. The role of mergers and halo spin in shaping galaxy morphology arXiv preprintarXiv:1609.09498.
  42. Bray, A.D. , Pillepich, A., Sales, L. V., Zhu, E., Genel, S., Rodriguez-Gomez, V., Torrey, P. Nelson, D., Vogelsberger, M., Springel, V. and others 2016. Modelling galactic conformity with the colour--halo age relation in the Illustris simulation Monthly Notices of the Royal Astronomical Society, 455, pp.185--198.
  43. Blecha, L., Sijacki, D., Kelley, L.Z., Torrey, P., Vogelsberger, M., Nelson, D., Springel, V., Snyder, G. and Hernquist, L. 2016. Recoiling black holes: prospects for detection and implications of spin alignment Monthly Notices of the Royal Astronomical Society, 456, pp.961--989.
  44. Mistani, P.A., Sales, L.V., Pillepich, A., Sanchez-Janssen, R., Vogelsberger, M., Nelson, D., Rodriguez-Gomez, V. , Torrey, P. and Hernquist, L. 2016. On the assembly of dwarf galaxies in clusters and their efficient formation of globular clusters Monthly Notices of the Royal Astronomical Society, 455, pp.2323--2336.
  45. Leja, J., Johnson, Benjamin D., Conroy, C., van Dokkum, P.G. and Byler, N. 2016. Deriving Physical Properties from Broadband Photometry with Prospector: Description of the Model and a Demonstration of its Accuracy Using 129 Galaxies in the Local Universe arXiv preprintarXiv:1609.09073
  46. Rix, Hans-Walter, Ting, Yuan-Sen, Conroy, C. and Hogg, David W. 2016. Constructing Polynomial Spectral Models for Stars The Astrophysical Journal Letters, 826, pp.L25.
  47. Gu, M., Conroy, C. and Behroozi, P. 2016. Hierarchical Galaxy Growth and Scatter in the Stellar Mass -- Halo Mass Relation The Astrophysical Journal, 833, pp.2.
  48. Ting, Yuan-Sen, Conroy, C. and Rix, Hans-Walter 2016. Accelerated Fitting of Stellar Spectra The Astrophysical Journal, 826, pp.83.
  49. Choi, J., Dotter, A., Conroy, C., Cantiello, M., Paxton, B. and Johnson, B.D. 2016. Mesa Isochrones and Stellar Tracks (MIST). I. Solar-scaled Models The Astrophysical Journal, 823, pp.102.
  50. Lemer, S., Gonzalez, V.L., Bieler, R. and Giribet, G. 2016. Cementing mussels to oysters in the pteriomorphian tree: a phylogenomic approach Proc. R. Soc. B, 283, pp.20160857.
  51. Komiske, P.T., Metodiev, E.M. and Schwartz, M.D. 2016. Deep learning in color: towards automated quark/gluon jet discrimination Journal of High Energy Physics2017:110
  52. Di, Q., Kloog, I., Koutrakis, P., Lyapustin, A., Wang, Y. and Schwartz, J. 2016. Assessing PM2. 5 exposures with high spatiotemporal resolution across the continental United States Environmental science & technology, 50(9), pp.4712-4721.
  53. Ishihara, K., Korolev, K.S. and Mitchison, T.J. 2016. Physical basis of large microtubule aster growth eLife,5, p.e19145.
  54. Cheron, N., Serohijos, A.W.R., Choi, J.M., and Shakhnovich, E. I. 2016. Evolutionary dynamics of viral escape under antibodies stress: A biophysical model Protein Science, 25, pp.1332.

2015 (61 publications)

  1. Muñoz, D. J., Kratter, K., Vogelsberger, M., Hernquist, L., & Springel, V. 2015. Stellar orbit evolution in close circumstellar disc encounters Monthly Notices of the Royal Astronomical Society,446(2), 2010-2029.
  2. Mckenna, D. D., Farrell, B. D., Caterino, M. S., Farnum, C. W., Hawks, D. C., Maddison, D. R., ... & Thayer, M. K. 2015. Phylogeny and evolution of Staphyliniformia and Scarabaeiformia: forest litter as a stepping stone for diversification of nonphytophagous beetles Systematic Entomology,40(1), 35-60.
  3. Kolesov, G., Vinichenko, D., Tritsaris, G. A., Friend, C. M., & Kaxiras, E. 2015. Anatomy of the Photo-chemical Reaction: Excited State Dynamics Reveals CH Acidity Mechanism of Methoxy Photo-oxidation on Titania The Journal of Physical Chemistry Letters.
  4. Boyle, J. H., Kaliszewska, Z. A., Espeland, M., Suderman, T. R., Fleming, J., Heath, A., & Pierce, N. E. 2015. Phylogeny of the Aphnaeinae: myrmecophilous African butterflies with carnivorous and herbivorous life histories Systematic Entomology,40(1), 169-182.
  5. Zimmerman, K., Levitis, D., Addicott, E., & Pringle, A. 2015. Selection of Pairings Reaching Evenly Across the Data (SPREAD): A simple algorithm to design maximally informative fully crossed mating experiments Heredity2015/09/30/online
  6. Zhou, Q., Xia, X., Luo, Z., Liang, H. and Eugene Shakhnovich, E. 2015. Searching the Sequence Space for Potent Aptamers Using SELEX in Silico. J. Chem. Theory Comput., Article ASAP DOI: 10.1021/acs.jctc.5b00707
  7. Yang, S., Santillana, M., & Kou, S. C. 2015. ARGO: a model for accurate estimation of influenza epidemics using Google search data arXiv preprint arXiv:1505.00864.
  8. Wordsworth, R. D., Kerber, L., Pierrehumbert, R. T., Forget, F., & Head, J. W. 2015. Comparison of “warm and wet” and “cold and icy” scenarios for early Mars in a 3‐D climate model Journal of Geophysical Research: Planets, 120(6), 1201-1219.
  9. Wallace EWJ, Kear-Scott JL, Pilipenko EV, Schwartz MH, Laskowski PR, Rojek AE, Katanski CD, Riback JA, Dion MF, Franks AM, Airoldi EM, Pan T, Budnik BA, and Drummond DA. 2015. Reversible, specific, active aggregates of endogenous proteins assemble upon heat stress Cell162(6).
  10. Thompson, T. B., Plesch, A., Shaw, J. H., & Meade, B. J. 2015. Rapid slip‐deficit rates at the eastern margin of the Tibetan Plateau prior to the 2008 Mw 7.9 Wenchuan earthquake Geophysical Research Letters,42(6), 1677-1684.
  11. Snoek, J., Rippel, O., Swersky, K., Kiros, R., Satish, N., Sundaram, N., ... & Adams, R. P. 2015. Scalable Bayesian Optimization Using Deep Neural Networks arXiv preprint arXiv:1502.05700.
  12. SINGH, M. S., & KUANG, Z. 2015. Revisiting the role of eddies in determining the strength of the equinoctial Hadley circulation Journal of the Atmospheric Sciences73 (6): 2427–2444
  13. Shechner, D. M., Hacisuleyman, E., Younger, S. T., & Rinn, J. L. 2015. Multiplexable, locus-specific targeting of long RNAs with CRISPR-Display Nature methods.
  14. Sharma, P., Fernández, R., González Santillán, E., Monod, L. 2015. Phylogenomic resolution of scorpions reveals multilevel discordance with morphological phylogenetic signal Proceedings of the Royal Society B: Biological Sciences282: 20142953.
  15. Shapiro, Lori R., et al. 2015. Horizontal gene acquisitions, mobile element proliferation, and genome decay in the host-restricted plant pathogen Erwinia tracheiphila Genome Biology and Evolution(accepted)
  16. Shapiro, L. R., Scully, E. D., Roberts, D., Straub, T. J., Geib, S. M., Park, J., ... & Zhaxybayeva, O. 2015. Draft genome sequence of Erwinia tracheiphila, an economically important bacterial pathogen of cucurbits Genome announcements,(3), e00482-15.
  17. Sawaya, N. P., Huh, J., Fujita, T., Saikin, S. K., & Aspuru-Guzik, A. 2015. Fast Delocalization Leads To Robust Long-Range Excitonic Transfer in a Large Quantum Chlorosome Model Nano letters,15(3), 1722-1729.
  18. Sanders, J. N., Andrade, X., & Aspuru-Guzik, A. 2015. Compressed Sensing for the Fast Computation of Matrices: Application to Molecular Vibrations ACS Central Science.
  19. Sales, L. V., Vogelsberger, M., Genel, S., Torrey, P., Nelson, D., Rodriguez-Gomez, V., ... & Hernquist, L. 2015. The colours of satellite galaxies in the Illustris simulation Monthly Notices of the Royal Astronomical Society: Letters,447(1), L6-L10.
  20. Pyzer-Knapp, E. O., Simm, G. N., & Aspuru-Guzik, A. 2015. A Bayesian Approach to Calibrating High-Throughput Virtual Screening Results and Application to Organic Photovoltaic Materials arXiv preprintarXiv:1510.00388.
  21. Pyzer‐Knapp, E. O., Li, K., & Aspuru‐Guzik, A. 2015. Learning from the Harvard Clean Energy Project: The Use of Neural Networks to Accelerate Materials Discovery Advanced Functional Materials,25(41), 6495-6502.
  22. Prescott, J., Setiawan, V. W., Wentzensen, N., Schumacher, F., Yu, H., Delahanty, R., ... & Friedenreich, C. 2015. Body Mass Index Genetic Risk Score and Endometrial Cancer Risk PloS one,10(11).
  23. Parker, A. H. 2015. The intrinsic Neptune Trojan orbit distribution: Implications for the primordial disk and planet migration Icarus,247, 112-125.
  24. Novitsky, V., Moyo, S., Lei, Q., DeGruttola, V., & Essex, M. 2015. Importance of Viral Sequence Length and Number of Variable and Informative Sites in Analysis of HIV Clustering AIDS research and human retroviruses,31(5), 531-542.
  25. Moreno, J., Torrey, P., Ellison, S. L., Patton, D. R., Bluck, A. F., Bansal, G., & Hernquist, L. 2015. Mapping galaxy encounters in numerical simulations: The spatial extent of induced star formation arXiv preprint arXiv:1501.03573.
  26. Menegas, W., Bergan, J. F.,Ogawa, S. K., Isogai, Y., Venkataraju, K. U., Osten, P., Uchida, N., Mitsuko Watabe-Uchida, M. 2015. Dopamine neurons projecting to the posterior striatum form an anatomically distinct subclass eLife2015;10.7554/eLife.10032
  27. Malone, J. H. 2015. Balancing copy number in ribosomal DNA Proceedings of the National Academy of Sciences,112(9), 2635-2636.
  28. Lemon, C. M., Halbach, R. L., Huynh, M., & Nocera, D. G. 2015. Photophysical Properties of β-Substituted Free-Base Corroles Inorganic chemistry,54(6), 2713-2725.
  29. Lavrentovich, M. O. 2015. Critical Fitness Collapse in Three-Dimensional Spatial Population Genetics arXiv preprint arXiv:1504.00748.
  30. Laumer, C. E., Hejnol, A., & Giribet, G. 2015. Nuclear genomic signals of the ‘microturbellarian’roots of platyhelminth evolutionary innovation eLife,4, e05503.
  31. Kwan, E. E., & Liu, R. Y. 2015. Enhancing NMR Prediction for Organic Compounds Using Molecular Dynamics Journal of Chemical Theory and Computation.doi:10.1021/acs.jctc.5b00856.
  32. Kumar, S., Gezari, S., Heinis, S., Chornock, R., Berger, E., Rest, A., ... & Wainscoat, R. J. 2015. Selection of Burst-like Transients and Stochastic Variables Using Multi-Band Image Differencing in the Pan-STARRS1 Medium-Deep Survey arXiv preprint arXiv:1501.01314.
  33. Kreisbeck, C., & Aspuru-Guzik, A. 2015. Efficiency of energy funneling in the photosystem II supercomplex of higher plants arXiv preprint arXiv:1502.02657.
  34. Koo, B. J., Huynh, M., Halbach, R. L., Stubbe, J., & Nocera, D. G. 2015. Modulation of Phenol Oxidation in Cofacial Dyads Journal of the American Chemical Society.
  35. Kim, S. I., & Farrell, B. D. 2015. Phylogeny of world stag beetles (Coleoptera: Lucanidae) reveals a Gondwanan origin of Darwin’s stag beetle Molecular phylogenetics and evolution,86, 35-48.
  36. Julio D Perez, Nimrod D Rubinstein, Daniel E Fernandez, Stephen W Santoro, Leigh A Needleman, Olivia Ho-Shing, John J Choi, Mariela Zirlinger, Shau-Kwaun Chen, Jun S Liu, Catherine Dulac. 2015. Quantitative and functional interrogation of parent-of-origin allelic expression biases in the brain eLife 2015;10.7554/eLife.07860.
  37. Hung, C. L., Hayward, C. C., Smith, H. A., Ashby, M. L., Lanz, L., Martínez-Galarza, J. R., ... & Zezas, A. 2015. Merger Signatures in the Dynamics of Star-forming Gas arXiv preprintarXiv:1511.08481.
  38. Huang, D., Song, C. L., Webb, T. A., Fang, S., Chang, C. Z., Moodera, J. S., ... & Hoffman, J. E. 2015. Revealing the Empty-State Electronic Structure of Single-Unit-Cell FeSe/SrTiO $ _ {3} $ arXiv preprint arXiv:1503.04792.
  39. Holmes, Avram J., et al. 2015. "Brain Genomics Superstruct Project initial data release with structural, functional, and behavioral measures." (Nature) Scientific data 2.
  40. Häse, F., Valleau, S., Pyzer-Knapp, E., & Aspuru-Guzik, A. 2015. Machine Learning Exciton Dynamics arXiv preprintarXiv:1511.07883.
  41. González, V. L., Andrade, S. C., Bieler, R., Collins, T. M., Dunn, C. W., Mikkelsen, P. M., ... & Giribet, G. 2015. A phylogenetic backbone for Bivalvia: an RNA-seq approach Proceedings of the Royal Society B: Biological Sciences,282(1801), 20142332.
  42. Giesa, T., Perry, C. C., & Buehler, M. J. 2015. Secondary Structure Transition and Critical Stress for a Model of Spider Silk Assembly Biomacromolecules.
  43. Genel, S., Fall, S. M., Hernquist, L., Vogelsberger, M., Snyder, G. F., Rodriguez-Gomez, V., ... & Springel, V. 2015. Galactic Angular Momentum in the Illustris Simulation: Feedback and the Hubble Sequence arXiv preprint arXiv:1503.01117.
  44. French, R. G., Dawson, R. I., & Showalter, M. R. 2015. Resonances, Chaos, and Short-term Interactions Among the Inner Uranian Satellites The Astronomical Journal,149(4), 142.
  45. Fernández, R., Giribet, G. 2015. Unnoticed in the tropics: phylogenomic resolution of the poorly-known arachnid order Ricinulei (Arachnida) Royal Society Open Science, 2:150065
  46. Feng, Y., Di-Matteo, T., Croft, R. A., Bird, S., Battaglia, N., & Wilkins, S. 2015. The BlueTides Simulation: First Galaxies and Reionization arXiv preprint arXiv:1504.06619.
  47. Farhadifar, R., Baer, C. F., Valfort, A. C., Andersen, E. C., Müller-Reichert, T., Delattre, M., & Needleman, D. J. 2015. Scaling, selection, and evolutionary dynamics of the mitotic spindle Current Biology,25(6), 732-740.
  48. Fang, S., Defo, R. K., Shirodkar, S. N., Lieu, S., Tritsaris, G. A., & Kaxiras, E. 2015. Ab initio tight-binding Hamiltonian for transition metal dichalcogenides Physical Review B,92(20), 205108.
  49. Cvijović, I., Good, B. H., Jerison, E. R., & Desai, M. M. 2015. Fate of a mutation in a fluctuating environment Proceedings of the National Academy of Sciences, 201505406.
  50. Corbett-Detig, R. B., Hartl, D. L., & Sackton, T. B. 2015. Natural selection constrains neutral diversity across a wide range of species PLoS Bioldoi:10.1371/journal.pbio.1002112
  51. Chotibut, T., & Nelson, D. R. 2015. Evolutionary dynamics with fluctuating population sizes and strong mutualism Physical Review E,92(2), 022718.
  52. Chéron, N., Yu, C., Kolawole, A. O., Shakhnovich, E. I., & Wobus, C. E. 2015. Repurposing of rutin for the inhibition of norovirus replication Archives of virology,160(9), 2353-2358.
  53. Chéron, N., Jasty, N., & Shakhnovich, E. I. 2015. OpenGrowth: an automated and rational algorithm for finding new protein ligands Journal of medicinal chemistry.
  54. Bray, A. D., Pillepich, A., Sales, L. V., Zhu, E., Genel, S., Rodriguez-Gomez, V., ... & Hernquist, L. 2015. Modeling Galactic Conformity with the Color-Halo Age Relation in the Illustris Simulation arXiv preprint arXiv:1508.05393.
  55. BICEP, T., Collaborations, K. A., Ade, P. A. R., Aikin, R. W., Barkats, D., Benton, S. J., ... & Vieregg, A. G. 2015. BICEP2/Keck Array IV: Optical Characterization and Performance of the BICEP2 and Keck Array Experiments arXiv preprint arXiv:1502.00596.
  56. Aspuru‐Guzik, A., Adams, R., Baldo, M., Aguilera‐Iparraguirre, J., & Gómez‐Bombarelli, R. 2015. June). 34.4: Invited Paper: Combinatorial Design of OLED‐Emitting Materials. In SID Symposium Digest of Technical Papers(Vol. 46, No. 1, pp. 505-506).
  57. Ade, P. A. R., Aikin, R. W., Barkats, D., Benton, S. J., Bischoff, C. A., Bock, J. J., ... & BICEP2 Collaboration. 2015. BICEP2 III: Instrumental Systematics arXiv preprint arXiv:1502.00608.
  58. Arnold, N. P., & Tziperman, E. 2015. Reductions in mid‐latitude upwelling‐favorable winds implied by weaker large‐scale Pliocene SST gradients Paleoceanography.
  59. Ade, P. A. R., Ahmed, Z., Aikin, R. W., Alexander, K. D., Barkats, D., Benton, S. J., ... & Sudiwala, R. V. 2015. BICEP2/Keck Array V: Measurements of B-mode Polarization at Degree Angular Scales and 150 GHz by the Keck Array arXiv preprint arXiv:1502.00643.
  60. Ade, P. A. R., Aikin, R. W., Amiri, M., Barkats, D., Benton, S. J., Bischoff, C. A., ... & Richter, S. 2015. Antenna-coupled TES bolometers used in BICEP2, Keck array, and SPIDER arXiv preprint arXiv:1502.00619.
  61. Childs, L.M. and Buckee, C.O. 2015. Dissecting the determinants of malaria chronicity: why within-host models struggle to reproduce infection dynamics Journal of The Royal Society Interface, 12(104), p.20141379.

2014 (51 publications)

  1. Sinkinson, M. 2014. Pricing and entry incentives with exclusive contracts: Evidence from smartphones Available at SSRN 2391745.
  2. Agarwal, N. 2014. An empirical model of the medical match (No. w20767). National Bureau of Economic Research.
  3. Zhao, S. D., Parmigiani, G., Huttenhower, C., & Waldron, L. 2014. Más-o-menos: a simple sign averaging method for discrimination in genomic data analysis Bioinformatics,30(21), 3062-3069.
  4. Mansuripur, T. S., & Mansuripur, M. 2014. Fresnel reflection from a cavity with net roundtrip gain Applied Physics Letters,104(12), 121106.
  5. Kawauchi, G. Y., & Giribet, G. 2014. Sipunculus nudus Linnaeus, 1766 (Sipuncula): cosmopolitan or a group of pseudo‐cryptic species? An integrated molecular and morphological approach Marine Ecology,35(4), 478-491.
  6. Hachmann, J., Olivares-Amaya, R., Jinich, A., Appleton, A. L., Blood-Forsythe, M. A., Seress, L. R., ... & Aspuru-Guzik, A. 2014. Lead candidates for high-performance organic photovoltaics from high-throughput quantum chemistry–the Harvard Clean Energy Project Energy & Environmental Science,7(2), 698-704.
  7. Gudjonson, H., Kats, M. A., Liu, K., Nie, Z., Kumacheva, E., & Capasso, F. 2014. Accounting for inhomogeneous broadening in nano-optics by electromagnetic modeling based on Monte Carlo methods Proceedings of the National Academy of Sciences,111(6), E639-E644.
  8. David, L. A., Maurice, C. F., Carmody, R. N., Gootenberg, D. B., Button, J. E., Wolfe, B. E., ... & Turnbaugh, P. J. 2014. Diet rapidly and reproducibly alters the human gut microbiome Nature,505(7484), 559-563.
  9. Zimmerman, K., Levitis, D., Addicott, E., & Pringle, A. 2014. Maximizing the mean nearest neighbor distance of a trait to choose among potential crosses and design a fully crossed mating experiment bioRxiv, 009720.
  10. Wordsworth, R. 2014. Atmospheric heat redistribution and collapse on tidally locked rocky planets arXiv preprint arXiv:1412.5575.
  11. Vogelsberger, M., Genel, S., Springel, V., Torrey, P., Sijacki, D., Xu, D., ... & Hernquist, L. 2014. Properties of galaxies reproduced by a hydrodynamic simulation Nature,509(7499), 177-182.
  12. Villaescusa-Navarro, F., Viel, M., Alonso, D., Datta, K. K., Bull, P., & Santos, M. G. 2014. Cross-correlating 21cm intensity maps with Lyman Break Galaxies in the post-reionization era arXiv preprint arXiv:1410.7393.
  13. Tan, S. M., Kirchner, R., Jin, J., Hofmann, O., McReynolds, L., Hide, W., & Lieberman, J. 2014. Sequencing of captive target transcripts identifies the network of regulated genes and functions of primate-specific miR-522 Cell reports,8(4), 1225-1239.
  14. Schlafly, E. F., Green, G., Finkbeiner, D. P., Jurić, M., Rix, H. W., Martin, N. F., ... & Waters, C. 2014. A Map of Dust Reddening to 4.5 kpc from Pan-STARRS1 The Astrophysical Journal,789(1), 15.
  15. Suchow, J. W. 2014. Measuring, monitoring, and maintaining memories in a partially observable mind Doctoral dissertation, Harvard University.
  16. Subramaniam, A. R., Zid, B. M., & O’Shea, E. K. 2014. An Integrated Approach Reveals Regulatory Controls on Bacterial Translation Elongation Cell,159(5), 1200-1211.
  17. Steiner, J. F., McClintock, J. E., Orosz, J. A., Remillard, R. A., Bailyn, C. D., Kolehmainen, M., & Straub, O. 2014. The Low-Spin Black Hole in LMC X-3 The Astrophysical Journal Letters,793(2), L29.
  18. Sanders, N., Betancourt, M., & Soderberg, A. 2014. Unsupervised Transient Light Curve Analysis Via Hierarchical Bayesian Inference arXiv preprint arXiv:1404.3619.
  19. Sanders, J. N., Andrade, X., & Aspuru-Guzik, A. 2014. A sparse-sampling approach for the fast computation of matrices: application to molecular vibrations arXiv preprint arXiv:1410.4848.
  20. Sackton, T. B., Corbett‐Detig, R. B., Nagaraju, J., Vaishna, L., Arunkumar, K. P., & Hartl, D. L. 2014. POSITIVE SELECTION DRIVES FASTER‐Z EVOLUTION IN SILKMOTHS Evolution,68(8), 2331-2342.
  21. Riesgo, A., Novo, M., Sharma, P. P., Peterson, M., Maldonado, M., & Giribet, G. 2014. Inferring the ancestral sexuality and reproductive condition in sponges (Porifera) Zoologica Scripta,43(1), 101-117.
  22. Punk, M., Chowdhury, D., & Sachdev, S. 2014. Topological excitations and the dynamic structure factor of spin liquids on the kagome lattice Nature Physics,10(4), 289-293.
  23. Parr, C. S., Wilson, M. N., Leary, M. P., Schulz, K. S., Lans, M. K., Walley, M. L., ... & Corrigan Jr, M. R. J. 2014. The encyclopedia of life v2: providing global access to knowledge about life on Earth Biodiversity data journal, (2).
  24. Moreno, J. 2014. Rings of star formation: Imprints of a close galaxy encounter arXiv preprint arXiv:1412.4443.
  25. Moore, M., Kuang, Z., & Blossey, P. N. 2014. A moisture budget perspective of the amount effect Geophysical Research Letters,41(4), 1329-1335.
  26. Miller, A., Bornn, L., Adams, R., & Goldsberry, K. 2014. Factorized point process intensities: A spatial analysis of professional basketball arXiv preprint arXiv:1401.0942.
  27. Martínez-Galarza, J. R., Smith, H. A., Lanz, L., Hayward, C. C., Zezas, A., Rosenthal, L., ... & Groves, B. 2014. Variations of the ISM Conditions Across the Main Sequence of Star-Forming Galaxies: Observations and Simulations arXiv preprint arXiv:1412.2760.
  28. Ma, D., Boos, W., & Kuang, Z. 2014. Effects of orography and surface heat fluxes on the south Asian summer monsoon Journal of Climate,27(17), 6647-6659.
  29. Lemer, S., Buge, B., Bemis, A., Giribet, G. 2014. First molecular phylogeny of the circumtropical bivalve family Pinnidae (Mollusca, Bivalvia): evidence for high levels of cryptic species diversity Molecular Phylogenetics and Evolution, 75: 11-23
  30. Lemer, S., Kawauchi, GY, Andrade, CS, Boyle, MJ, Giribet, G. 2014. Re-evaluating the phylogeny of Sipuncula through transcriptomics Molecular Phylogenetics and Evolution, 83: 174-183
  31. Laumer, C. E., & Giribet, G. 2014. Inclusive taxon sampling suggests a single, stepwise origin of ectolecithality in Platyhelminthes Biological Journal of the Linnean Society,111(3), 570-588.
  32. Lanz, L., Hayward, C. C., Zezas, A., Smith, H. A., Ashby, M. L., Brassington, N., ... & Hernquist, L. 2014. Simulated Galaxy Interactions as Probes of Merger Spectral Energy Distributions The Astrophysical Journal,785(1), 39.
  33. Kim, K. H., Ramadhar, T. R., Beemelmanns, C., Cao, S., Poulsen, M., Currie, C. R., & Clardy, J. 2014. Natalamycin A, an ansamycin from a termite-associated Streptomyces sp Chemical Science,5(11), 4333-4338.
  34. Karkare, K. S., Ade, P. A. R., Ahmed, Z., Aikin, R. W., Alexander, K. D., Amiri, M., ... & Schwarz, R. 2014. August). Keck Array and BICEP3: spectral characterization of 5000+ detectors. In SPIE Astronomical Telescopes+ Instrumentation(pp. 91533B-91533B). International Society for Optics and Photonics.
  35. Johnson, A. S., Yuen-Zhou, J., Aspuru-Guzik, A., & Krich, J. J. 2014. Practical witness for electronic coherences The Journal of chemical physics,141(24), 244109.
  36. Hyland, E. M., Wallace, E. W., & Murray, A. W. 2014. A Model for the Evolution of Biological Specificity: a Cross-Reacting DNA-Binding Protein Causes Plasmid Incompatibility Journal of bacteriology,196(16), 3002-3011.
  37. Hayward, C. C., Lanz, L., Ashby, M. L., Fazio, G., Hernquist, L., Martínez-Galarza, J. R., ... & Zezas, A. 2014. The total infrared luminosity may significantly overestimate the star formation rate of quenching and recently quenched galaxies Monthly Notices of the Royal Astronomical Society,445(2), 1598-1604.
  38. Guo, X., Sironi, L., & Narayan, R. 2014. Non-thermal Electron Acceleration in Low Mach Number Collisionless Shocks. I. Particle Energy Spectra and Acceleration Mechanism The Astrophysical Journal,794(2), 153.
  39. Gibbons, J. G., Branco, A. T., Yu, S., & Lemos, B. 2014. Ribosomal DNA copy number is coupled with gene expression variation and mitochondrial abundance in humans Nature communications,5.
  40. Frenkel, E. M., Good, B. H., & Desai, M. M. 2014. The fates of mutant lineages and the distribution of fitness effects of beneficial mutations in laboratory budding yeast populations Genetics,196(4), 1217-1226.
  41. Fernández, R., Vahtera, V., Laumer, C.E., Libro, S., Kaluziak, S., Sharma, P.P., Pérez-Porro, A., Edgecombe, G.D., Giribet, G. 2014. Evaluating topological conflict in centipede phylogeny using transcriptomic data sets Molecular Biology and Evolution, 31(6): 1500-1513.
  42. Fernández, R., Hormiga, G., Giribet, G. 2014. Phylogenomic analysis of spiders reveals non-monophyly of orb-weavers Current Biology24, 1772-1777
  43. Dasmeh, P., Serohijos, A. W., Kepp, K. P., & Shakhnovich, E. I. 2014. The influence of selection for protein stability on dN/dS estimations Genome biology and evolution,6(10), 2956-2967.
  44. Drout, M. R., Chornock, R., Soderberg, A. M., Sanders, N. E., McKinnon, R., Rest, A., ... & Waters, C. 2014. Rapidly Evolving and Luminous Transients from Pan-STARRS1 The Astrophysical Journal,794(1), 23.
  45. Cubuk, E. D., & Kaxiras, E. 2014. Theory of structural transformation in lithiated amorphous silicon Nano letters,14(7), 4065-4070.
  46. Chornock, R., Berger, E., Gezari, S., Zauderer, B. A., Rest, A., Chomiuk, L., ... & Wainscoat, R. 2014. The Ultraviolet-bright, Slowly Declining Transient PS1-11af as a Partial Tidal Disruption Event The Astrophysical Journal,780(1), 44.
  47. Carter, A. C., Davis-Dusenbery, B. N., Koszka, K., Ichida, J. K., & Eggan, K. 2014. Nanog-independent reprogramming to iPSCs with canonical factors Stem cell reports,2(2), 119-126.
  48. Akeju, O., Davis-Dusenbery, B. N., Cassel, S. H., Ichida, J. K., & Eggan, K. 2014. Ketamine exposure in early development impairs specification of the primary germ cell layers Neurotoxicology and teratology,43, 59-68.
  49. Ade, P. A. R., Aikin, R. W., Amiri, M., Barkats, D., Benton, S. J., Bischoff, C. A., ... & Wong, C. L. 2014. BICEP2. II. Experiment and three-year Data Set The Astrophysical Journal,792(1), 62.
  50. Ade, P. A. R., Aikin, R. W., Barkats, D., Benton, S. J., Bischoff, C. A., Bock, J. J., ... & Bicep2 Collaboration. 2014. Detection of B-mode polarization at degree angular scales by BICEP2 Physical Review Letters,112(24), 241101.
  51. Green, G. M., Schlafly, E. F., Finkbeiner, D. P., Jurić, M., Rix, H. W., Burgett, W., ... & Waters, C. 2014. Measuring Distances and Reddenings for a Billion Stars: Toward a 3D Dust Map from Pan-STARRS 1 The Astrophysical Journal,783(2), 114.

2013 (22 publications)

  1. Wang, A., Kaz, D. M., McGorty, R., & Manoharan, V. N. 2013. February). Relaxation dynamics of colloidal particles at liquid interfaces. In 4th International Symposium on Slow Dynamics in Complex Systems: Keep Going Tohoku(Vol. 1518, No. 1, pp. 336-343). AIP Publishing.
  2. Vikas, S. 2013. Quasars, Carbon, and supernovae: Exploring the distribution of elements in an expanding universe Doctoral dissertation, University of Pittsburgh.
  3. Vahtera, V., Edgecombe, G. D., & Giribet, G. 2013. Phylogenetics of scolopendromorph centipedes: can denser taxon sampling improve an artificial classification? Invertebrate Systematics,27(5), 578-602.
  4. Tritsaris, G. A., Malone, B. D., & Kaxiras, E. 2013. Optoelectronic properties of single-layer, double-layer, and bulk tin sulfide: A theoretical study Journal of Applied Physics,113(23), 233507.
  5. Tritsaris, G. A., Kaxiras, E., Meng, S., & Wang, E. 2013. Adsorption and diffusion of lithium on layered silicon for Li-ion storage Nano letters,13(5), 2258-2263.
  6. Tingley, M. P., & Huybers, P. 2013. Recent temperature extremes at high northern latitudes unprecedented in the past 600 years Nature,496(7444), 201-205.
  7. Suzuki, N., Maroof, A. M., Merkle, F. T., Koszka, K., Intoh, A., Armstrong, I., ... & Eggan, K. 2013. The mouse C9ORF72 ortholog is enriched in neurons known to degenerate in ALS and FTD Nature neuroscience,16(12), 1725-1727.
  8. Snyder, G. F. 2013. Modeling spatially and spectrally resolved observations to diagnose the formation of elliptical galaxies Doctoral dissertation, Harvard University
  9. Snyder, G. F., Hayward, C. C., Sajina, A., Jonsson, P., Cox, T. J., Hernquist, L., ... & Yan, L. 2013. Modeling Mid-infrared Diagnostics of Obscured Quasars and Starbursts The Astrophysical Journal,768(2), 168.
  10. Sanders, N. E., Soderberg, A. M., Foley, R. J., Chornock, R., Milisavljevic, D., Margutti, R., ... & Price, P. A. 2013. PS1-12sk is a Peculiar Supernova From a He-rich Progenitor System in a Brightest Cluster Galaxy Environment The Astrophysical Journal,769(1), 39.
  11. Nicolaisen, L. E., & Desai, M. M. 2013. Distortions in genealogies due to purifying selection and recombination Genetics,195(1), 221-230.
  12. Lunnan, R., Chornock, R., Berger, E., Milisavljevic, D., Drout, M., Sanders, N. E., ... & Price, P. A. 2013. PS1-10bzj: A fast, hydrogen-poor superluminous supernova in a metal-poor host galaxy The Astrophysical Journal,771(2), 97.
  13. Knap, M., Kantian, A., Giamarchi, T., Bloch, I., Lukin, M. D., & Demler, E. 2013. Probing real-space and time-resolved correlation functions with many-body Ramsey interferometry Physical review letters,111(14), 147205.
  14. Keenan, T. F., Davidson, E. A., Munger, J. W., & Richardson, A. D. 2013. Rate my data: quantifying the value of ecological data for the development of models of the terrestrial carbon cycle Ecological Applications,23(1), 273-286.
  15. Ingram, T., & Mahler, D. L. 2013. SURFACE: detecting convergent evolution from comparative data by fitting Ornstein‐Uhlenbeck models with stepwise Akaike Information Criterion Methods in Ecology and Evolution,4(5), 416-425.
  16. Herman, M. J., & Kuang, Z. 2013. Linear response functions of two convective parameterization schemes Journal of Advances in Modeling Earth Systems,5(3), 510-541.doi:10.1002/jame.20037.
  17. Hayward, C. C., Narayanan, D., Kereš, D., Jonsson, P., Hopkins, P. F., Cox, T. J., & Hernquist, L. 2013. Submillimetre galaxies in a hierarchical universe: number counts, redshift distribution and implications for the IMF Monthly Notices of the Royal Astronomical Society,428(3), 2529-2547.
  18. Dalla Torre, E. G., Otterbach, J., Demler, E., Vuletic, V., & Lukin, M. D. 2013. Dissipative preparation of spin squeezed atomic ensembles in a steady state Physical review letters,110(12), 120402.
  19. Cobey, S., & Lipsitch, M. 2013. Pathogen diversity and hidden regimes of apparent competition The American naturalist,181(1), 12.
  20. Chornock, R., Berger, E., Rest, A., Milisavljevic, D., Lunnan, R., Foley, R. J., ... & Price, P. A. 2013. PS1-10afx at z= 1.388: Pan-STARRS1 Discovery of a New Type of Superluminous Supernova The Astrophysical Journal,767(2), 162.
  21. Blasi, T., Borunda, M. F., Räsänen, E., & Heller, E. J. 2013. Optimal local control of coherent dynamics in custom-made nanostructures Physical Review B,87(24), 241303.
  22. Wallace, E. W., Airoldi, E. M., & Drummond, D. A. 2013. Estimating selection on synonymous codon usage from noisy experimental data Molecular biology and evolution, mst051.

2012 (29 publications)

  1. Zhao, K., Tritsaris, G. A., Pharr, M., Wang, W. L., Okeke, O., Suo, Z., ... & Kaxiras, E. 2012. Reactive flow in silicon electrodes assisted by the insertion of lithium Nano letters,12(8), 4397-4403.
  2. Youdin, A. N., Kratter, K. M., & Kenyon, S. J. 2012. Circumbinary Chaos: Using Pluto's Newest Moon to Constrain the Masses of Nix and Hydra The Astrophysical Journal,755(1), 17.
  3. Watson, M. A., Rappoport, D., Lee, E. M., Olivares-Amaya, R., & Aspuru-Guzik, A. 2012. Electronic structure calculations in arbitrary electrostatic environments The Journal of chemical physics,136(2), 024101.
  4. Wang, Y., Khardon, R., & Protopapas, P. 2012. Nonparametric bayesian estimation of periodic light curves The Astrophysical Journal,756(1), 67.
  5. Vahtera, V., Edgecombe, G. D., & Giribet, G. 2012. Evolution of blindness in scolopendromorph centipedes (Chilopoda: Scolopendromorpha): insight from an expanded sampling of molecular data Cladistics,28(1), 4-20.
  6. Tritsaris, G. A., Mathioudakis, C., Kelires, P. C., & Kaxiras, E. 2012. Optical and elastic properties of diamond-like carbon with metallic inclusions: A theoretical study Journal of Applied Physics,112(10), 103503.
  7. Tritsaris, G. A., Zhao, K., Okeke, O. U., & Kaxiras, E. 2012. Diffusion of lithium in bulk amorphous silicon: a theoretical study The Journal of Physical Chemistry C,116(42), 22212-22216.
  8. Steiner, J. F., McClintock, J. E., & Reid, M. J. 2012. The Distance, Inclination, and Spin of the Black Hole Microquasar H1743-322 The Astrophysical Journal Letters,745(1), L7.
  9. Sijacki, D., Vogelsberger, M., Kereš, D., Springel, V., & Hernquist, L. 2012. Moving mesh cosmology: the hydrodynamics of galaxy formation Monthly Notices of the Royal Astronomical Society,424(4), 2999-3027.
  10. Sharma, P. P. 2012. New Australasian Zalmoxidae (Opiliones: Laniatores) and a new case of male polymorphism in Opiliones Zootaxa,3236, 1-35.
  11. Sharma, P. P., González, V. L., Kawauchi, G. Y., Andrade, S. C., Guzmán, A., Collins, T. M., ... & Giribet, G. 2012. Phylogenetic analysis of four nuclear protein-encoding genes largely corroborates the traditional classification of Bivalvia (Mollusca) Molecular Phylogenetics and Evolution,65(1), 64-74.
  12. Sharma, P. P., Schwager, E. E., Extavour, C. G., & Giribet, G. 2012. Hox gene expression in the harvestman Phalangium opilio reveals divergent patterning of the chelicerate opisthosoma Evolution & development,14(5), 450-463.
  13. Sanders, J. N., Saikin, S. K., Mostame, S., Andrade, X., Widom, J. R., Marcus, A. H., & Aspuru-Guzik, A. 2012. Compressed sensing for multidimensional spectroscopy experiments The Journal of Physical Chemistry Letters,3(18), 2697-2702.
  14. Rotz, D. 2012. Do Outside Options Matter Inside Marriage? Evidence from State Welfare Reforms Evidence from State Welfare Reforms (June 20, 2012).
  15. Räsänen, E., Blasi, T., Borunda, M. F., & Heller, E. J. 2012. Optical control of entangled states in semiconductor quantum wells Physical Review B,86(20), 205308.
  16. Pichara, K., Protopapas, P., Kim, D. W., Marquette, J. B., & Tisserand, P. 2012. An improved quasar detection method in EROS-2 and MACHO LMC data sets Monthly Notices of the Royal Astronomical Society,427(2), 1284-1297.
  17. Padmanabhan, N., Xu, X., Eisenstein, D. J., Scalzo, R., Cuesta, A. J., Mehta, K. T., & Kazin, E. 2012. A 2 per cent distance to z= 0.35 by reconstructing baryon acoustic oscillations–I. Methods and application to the Sloan Digital Sky Survey Monthly Notices of the Royal Astronomical Society,427(3), 2132-2145.
  18. Liu, J., Orosz, J., & Bregman, J. N. 2012. Dynamical mass constraints on the ultraluminous X-ray source NGC 1313 X-2 The Astrophysical Journal,745(1), 89.
  19. Kim, D. W., Protopapas, P., Trichas, M., Rowan-Robinson, M., Khardon, R., Alcock, C., & Byun, Y. I. 2012. A Refined QSO Selection Method Using Diagnostics Tests: 663 QSO Candidates in the Large Magellanic Cloud The Astrophysical Journal,747(2), 107.
  20. Kaz, D. M., McGorty, R., Mani, M., Brenner, M. P., & Manoharan, V. N. 2012. Physical ageing of the contact line on colloidal particles at liquid interfaces Nature materials,11(2), 138-142.
  21. Kawauchi, G. Y., Sharma, P. P., & Giribet, G. 2012. Sipunculan phylogeny based on six genes, with a new classification and the descriptions of two new families Zoologica Scripta,41(2), 186-210.
  22. Hayward, C. C., Jonsson, P., Kereš, D., Magnelli, B., Hernquist, L., & Cox, T. J. 2012. How to distinguish starbursts and quiescently star-forming galaxies: the ‘bimodal’submillimetre galaxy population as a case study Monthly Notices of the Royal Astronomical Society,424(2), 951-970.
  23. Giribet, G., Sharma, P. P., Benavides, L. R., Boyer, S. L., Clouse, R. M., De Bivort, B. L., ... & Schwendinger, P. J. 2012. Evolutionary and biogeographical history of an ancient and global group of arachnids (Arachnida: Opiliones: Cyphophthalmi) with a new taxonomic arrangement Biological Journal of the Linnean Society,105(1), 92-130.
  24. Fung, J., Perry, R. W., Dimiduk, T. G., & Manoharan, V. N. 2012. Imaging multiple colloidal particles by fitting electromagnetic scattering solutions to digital holograms Journal of Quantitative Spectroscopy and Radiative Transfer,113(18), 2482-2489.
  25. Edgecombe, G. D., Vahtera, V., Stock, S. R., Kallonen, A., Xiao, X., Rack, A., & Giribet, G. 2012. A scolopocryptopid centipede (Chilopoda: Scolopendromorpha) from Mexican amber: synchrotron microtomography and phylogenetic placement using a combined morphological and molecular data set Zoological Journal of the Linnean Society,166(4), 768-786.
  26. Derr, J., Manapat, M. L., Rajamani, S., Leu, K., Xulvi-Brunet, R., Joseph, I., ... & Chen, I. A. 2012. Prebiotically plausible mechanisms increase compositional diversity of nucleic acid sequences Nucleic acids research,40(10), 4711-4722.
  27. Clements, M. D., Bart, H. L., & Hurley, D. L. 2012. A different perspective on the phylogenetic relationships of the Moxostomatini (Cypriniformes: Catostomidae) based on cytochrome-b and Growth Hormone intron sequences Molecular phylogenetics and evolution,63(1), 159-167.
  28. Andrade, X., Sanders, J. N., & Aspuru-Guzik, A. 2012. Application of compressed sensing to the simulation of atomic systems Proceedings of the National Academy of Sciences,109(35), 13928-13933.
  29. Dawson, R. I., Johnson, J. A., Morton, T. D., Crepp, J. R., Fabrycky, D. C., Murray-Clay, R. A., & Howard, A. W. 2012. The photoeccentric effect and proto-hot Jupiters. II. KOI-1474.01, a candidate eccentric planet perturbed by an unseen companion The Astrophysical Journal,761(2), 163.

2011 (22 publications)

  1. Tchekhovskoy, A., Narayan, R., & McKinney, J. C. 2011. Efficient generation of jets from magnetically arrested accretion on a rapidly spinning black hole Monthly Notices of the Royal Astronomical Society: Letters,418(1), L79-L83.
  2. Aktipis, S. W., Boehm, E., & Giribet, G. 2011. Another step towards understanding the slit‐limpets (Fissurellidae, Fissurelloidea, Vetigastropoda, Gastropoda): a combined five‐gene molecular phylogeny Zoologica Scripta,40(3), 238-259.
  3. Snyder, G. F., Cox, T. J., Hayward, C. C., Hernquist, L., & Jonsson, P. 2011. K+ A Galaxies as the Aftermath of Gas-rich Mergers: Simulating the Evolution of Galaxies as Seen by Spectroscopic Surveys The Astrophysical Journal,741(2), 77.
  4. Smith, S. A., Wilson, N. G., Goetz, F. E., Feehery, C., Andrade, S. C., Rouse, G. W., ... & Dunn, C. W. 2011. Resolving the evolutionary relationships of molluscs with phylogenomic tools Nature,480(7377), 364-367.
  5. Sharma, P. P., Vahtera, V., Kawauchi, G. Y., & Giribet, G. 2011. Running WILD: the case for exploring mixed parameter sets in sensitivity analysis Cladistics,27(5), 538-549.
  6. Rotz, D. 2011. Why have divorce rates fallen? The role of women’s age at marriage The Role of Women’s Age at Marriage (December 20, 2011).
  7. Olivares-Amaya, R., Stopa, M., Andrade, X., Watson, M. A., & Aspuru-Guzik, A. 2011. Anion stabilization in electrostatic environments The Journal of Physical Chemistry Letters,2(7), 682-688.
  8. Narayanan, D., Cox, T. J., Hayward, C. C., & Hernquist, L. 2011. The Kennicutt–Schmidt star formation relation at z∼ 2 Monthly Notices of the Royal Astronomical Society,412(1), 287-294.
  9. Ma, D., & Kuang, Z. 2011. Modulation of radiative heating by the Madden‐Julian Oscillation and convectively coupled Kelvin waves as observed by CloudSat Geophysical Research Letters,38(21).
  10. Krich, J. J., & Aspuru-Guzik, A. 2011. Scaling and localization lengths of a topologically disordered system Physical review letters,106(15), 156405.
  11. Kim, D. W., Protopapas, P., Byun, Y. I., Alcock, C., Khardon, R., & Trichas, M. 2011. Quasi-stellar object selection algorithm using time variability and machine learning: Selection of 1620 quasi-stellar object candidates from MACHO Large Magellanic Cloud database The Astrophysical Journal,735(2), 68.
  12. Kajiharal, H., Yamasaki, H., & Andrade, S. C. 2011. Carinoma hamanako sp. nov.(Nemertea: Palaeonemertea), the First Representative of the Genus from the Northwest Pacific Species Diversity,16, 149-165.
  13. Hayward, C. C., Kereš, D., Jonsson, P., Narayanan, D., Cox, T. J., & Hernquist, L. 2011. What Does a Submillimeter Galaxy Selection Actually Select? The Dependence of Submillimeter Flux Density on Star Formation Rate and Dust Mass The Astrophysical Journal,743(2), 159.
  14. Hartman, K., Johnson, J. L., Bertoni, M. I., Recht, D., Aziz, M. J., Scarpulla, M. A., & Buonassisi, T. 2011. SnS thin-films by RF sputtering at room temperature Thin Solid Films,519(21), 7421-7424.
  15. Hachmann, J., Olivares-Amaya, R., Atahan-Evrenk, S., Amador-Bedolla, C., Sánchez-Carrera, R. S., Gold-Parker, A., ... & Aspuru-Guzik, A. 2011. The Harvard clean energy project: large-scale computational screening and design of organic photovoltaics on the world community grid The Journal of Physical Chemistry Letters,2(17), 2241-2251.
  16. Gou, L., McClintock, J. E., Reid, M. J., Orosz, J. A., Steiner, J. F., Narayan, R., ... & Davis, S. W. 2011. The extreme spin of the black hole in Cygnus X-1 The Astrophysical Journal,742(2), 85.
  17. Fields, A. P., & Cohen, A. E. 2011. Electrokinetic trapping at the one nanometer limit Proceedings of the National Academy of Sciences,108(22), 8937-8942.
  18. Dawson, R. I., Murray-Clay, R. A., & Fabrycky, D. C. 2011. On the Misalignment of the Directly Imaged Planet β Pictoris b with the System's Warped Inner Disk The Astrophysical Journal Letters,743(1), L17.
  19. Casse, B. D. F., Lu, W. T., Huang, Y. J., & Sridhar, S. 2011. Robust method to determine the resolution of a superlens by analyzing the near-field image of a two-slit object arXiv preprint arXiv:1105.0182.
  20. Berg, E., Levin, M., & Altman, E. 2011. Quantized Pumping and Topology of the Phase Diagram for a System of Interacting Bosons Physical review letters,106(11), 110405.
  21. Andrade, S. C., Norenburg, J. L., & Solferini, V. N. 2011. Worms without borders: genetic diversity patterns in four Brazilian Ototyphlonemertes species (Nemertea, Hoplonemertea) Marine biology,158(9), 2109-2124.
  22. Aktipis, S. W., & Giribet, G. 2011. Testing relationships among the vetigastropod taxa: a molecular approach Journal of Molluscan Studies, eyr023.

2010 (19 publications)

  1. Xu, X., Narayanan, D., & Walker, C. 2010. Molecular Disk Properties in Early-type Galaxies The Astrophysical Journal Letters,721(2), L112.
  2. Tingley, M. P., & Huybers, P. 2010. A Bayesian algorithm for reconstructing climate anomalies in space and time. Part II: Comparison with the regularized expectation-maximization algorithm Journal of Climate,23(10), 2782-2800.
  3. Tingley, M. P., & Huybers, P. 2010. A Bayesian algorithm for reconstructing climate anomalies in space and time. Part I: Development and applications to paleoclimate reconstruction problems Journal of Climate,23(10), 2759-2781.
  4. Romps, D. M., & Kuang, Z. 2010. Nature versus nurture in shallow convection Journal of the Atmospheric Sciences,67(5), 1655-1666.
  5. Rogers, R. L., Bedford, T., Lyons, A. M., & Hartl, D. L. 2010. Adaptive impact of the chimeric gene Quetzalcoatl in Drosophila melanogaster Proceedings of the National Academy of Sciences,107(24), 10943-10948.
  6. Narayanan, D., Dey, A., Hayward, C. C., Cox, T. J., Bussmann, R. S., Brodwin, M., ... & Hernquist, L. 2010. A physical model for z∼ 2 dust-obscured galaxies Monthly Notices of the Royal Astronomical Society,407(3), 1701-1720.
  7. Narayanan, D., Hayward, C. C., Cox, T. J., Hernquist, L., Jonsson, P., Younger, J. D., & Groves, B. 2010. The formation of high-redshift submillimetre galaxies Monthly Notices of the Royal Astronomical Society,401(3), 1613-1619.
  8. Nadell, C. D., Foster, K. R., & Xavier, J. B. 2010. Emergence of spatial structure in cell groups and the evolution of cooperation PLoS computational biology,6(3), e1000716.
  9. Murienne, J., Karaman, I., & Giribet, G. 2010. Explosive evolution of an ancient group of Cyphophthalmi (Arachnida: Opiliones) in the Balkan Peninsula Journal of Biogeography,37(1), 90-102.
  10. Murienne, J., Edgecombe, G. D., & Giribet, G. 2010. Including secondary structure, fossils and molecular dating in the centipede tree of life Molecular Phylogenetics and Evolution,57(1), 301-313.
  11. McEachern, F. M., Ćuk, M., & Stewart, S. T. 2010. Dynamical evolution of the Hungaria asteroids Icarus,210(2), 644-654.
  12. Marcus, R. A., Sasselov, D., Stewart, S. T., & Hernquist, L. 2010. Water/icy super-Earths: giant impacts and maximum water content The Astrophysical Journal Letters,719(1), L45.
  13. Marcus, R. A., Sasselov, D., Hernquist, L., & Stewart, S. T. 2010. Minimum radii of super-Earths: constraints from giant impacts The Astrophysical Journal Letters,712(1), L73.
  14. Leinhardt, Z. M., Marcus, R. A., & Stewart, S. T. 2010. The formation of the collisional family around the dwarf planet Haumea The Astrophysical Journal,714(2), 1789.
  15. Kim, D. W., Protopapas, P., Alcock, C., Byun, Y. I., Kyeong, J., Lee, B. C., ... & Zhang, Z. W. 2010. The Taiwan-American Occultation Survey Project Stellar Variability. I. Detection of Low-Amplitude δ Scuti Stars The Astronomical Journal,139(2), 757.
  16. Foley, R. J., Narayan, G., Challis, P. J., Filippenko, A. V., Kirshner, R. P., Silverman, J. M., & Steele, T. N. 2010. SN? 2006bt: A Perplexing, Troublesome, and Possibly Misleading Type Ia Supernova The Astrophysical Journal,708(2), 1748.
  17. Bush, S. J., Cox, T. J., Hayward, C. C., Thilker, D., Hernquist, L., & Besla, G. 2010. Spiral-Induced Star Formation in the Outer Disks of Galaxies The Astrophysical Journal,713(2), 780.
  18. Goldman, J., & Gabrielse, G. 2010. Optimized planar Penning traps for quantum-information studies Physical Review A,81(5), 052335.
  19. Berezovsky, J., Borunda, M. F., Heller, E. J., & Westervelt, R. M. 2010. Imaging coherent transport in graphene (part I): mapping universal conductance fluctuations Nanotechnology,21(27), 274013.

2009 (4 publications)

  1. Younger, J. D., Hayward, C. C., Narayanan, D., Cox, T. J., Hernquist, L., & Jonsson, P. 2009. The merger-driven evolution of warm infrared luminous galaxies Monthly Notices of the Royal Astronomical Society: Letters,396(1), L66-L70.
  2. Likovich, E. M., Russell, K. J., Narayanamurti, V., Lu, H., & Gossard, A. C. 2009. Direct injection tunnel spectroscopy of a pn junction Applied Physics Letters,95(2), 022106_1-022106_3.
  3. Blocker, A. W., Protopapas, P., & Alcock, C. R. 2009. A Bayesian approach to the analysis of time symmetry in light curves: reconsidering Scorpius X-1 occultations The Astrophysical Journal,701(2), 1742.
  4. Narayanan, D., Cox, T. J., Hayward, C. C., Younger, J. D., & Hernquist, L. 2009. The star-forming molecular gas in high-redshift Submillimetre Galaxies Monthly Notices of the Royal Astronomical Society,400(4), 1919-1935.
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