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Office Hours Wed. 12-3PM
Research Computing holds office hours Wednesdays, 12PM-3PM, at 38 Oxford Street, room 206. Research Computing staff is on hand to answer questions and troubleshoot problems. Be sure to check out our Office Hours special topics series!
HCSPH Office Hours (Kresge 201)
Office hours for HCSPH are held jointly between FAS Research Computing and the HCSPH BioInfo Core.
Additionally, we often offer training sessions (see Events calendar or the link below) at the beginning of every other session.
More information for HCSPH users can be found on the HCSPH Research Computing page.
Training: Extended Unix/Bash Scripting – Kresge 201
This session will dive further into Unix core-utilities including sed, grep, and awk. We will also cover the basics in bash shell scripting, which should help you think about automating processes and building more complex job scripts.
Monthly Maintenance, Oct. 2, 2017 7am-11am
Monthly maintenance will occur on Monday, October 2nd from 7am to 11am.
- Login and NX node reboots will be rebooted.
- Additional details to follow.
Training: Extended Unix/Bash Scripting – 38 Oxford 206
This session will dive further into Unix core-utilities including sed, grep, and awk. We will also cover the basics in bash shell scripting, which should help you think about automating processes and building more complex job scripts.
Office Hours Wed. 12-3PM
Research Computing holds office hours Wednesdays, 12PM-3PM, at 38 Oxford Street, room 206. Research Computing staff is on hand to answer questions and troubleshoot problems. Be sure to check out our Office Hours special topics series!
HCSPH Office Hours (Kresge 205)
Office hours for HCSPH are held jointly between FAS Research Computing and the HCSPH BioInfo Core.
Additionally, we often offer training sessions (see Events calendar or the link below) at the beginning of every other session.
More information for HCSPH users can be found on the HCSPH Research Computing page.
Office Hours Wed. 12-3PM
Research Computing holds office hours Wednesdays, 12PM-3PM, at 38 Oxford Street, room 206. Research Computing staff is on hand to answer questions and troubleshoot problems. Be sure to check out our Office Hours special topics series!
HCSPH Office Hours (Kresge 205)
Office hours for HCSPH are held jointly between FAS Research Computing and the HCSPH BioInfo Core.
Additionally, we often offer training sessions (see Events calendar or the link below) at the beginning of every other session.
More information for HCSPH users can be found on the HCSPH Research Computing page.
Modules and Software Libraries – Kresge 205
Having issues wading through which of the 3000+ pieces of software installed on Odyssey you should be using? Still getting "command not found" or missing a shared object dependency? This session will illuminate the simplicities and intricacies of using software on Odyssey. We'll address: setting up your environment; the Lmod module system and how it works to your advantage and updating perl / R / python modules & packages in your environment.
HCSPH: Advanced plotting (including volcano plots and heatmaps)
This session is presented by our partners in the HSPH BioInfo Core.
Location: Building FXB, Room G1
For this workshop, we will be using R to perform a variety of advanced plotting methods. Using several R packages (ggplot2, ggrepel, pheatmap, etc.), we will learn how to change from a wide data format to a long data format for plotting purposes, how to label and/or repel individual data points on a scatter plot, and how to create heatmaps and volcano plots.
Prerequisite: Beginner R or Intro R workshop
More Details and Other Sessions
Modules and Software Libraries – 38 Oxford 206
Having issues wading through which of the 3000+ pieces of software installed on Odyssey you should be using? Still getting "command not found" or missing a shared object dependency? This session will illuminate the simplicities and intricacies of using software on Odyssey. We'll address: setting up your environment; the Lmod module system and how it works to your advantage and updating perl / R / python modules & packages in your environment.
FAS: Wednesday, October 18th 11:00AM in 38 Oxford 206
Office Hours Wed. 12-3PM
Research Computing holds office hours Wednesdays, 12PM-3PM, at 38 Oxford Street, room 206. Research Computing staff is on hand to answer questions and troubleshoot problems. Be sure to check out our Office Hours special topics series!
HCSPH Office Hours (Kresge 201)
Office hours for HCSPH are held jointly between FAS Research Computing and the HCSPH BioInfo Core.
Additionally, we often offer training sessions (see Events calendar or the link below) at the beginning of every other session.
More information for HCSPH users can be found on the HCSPH Research Computing page.
Mathworks: Hands-on Parallel Computing (Registration Required)
* Registration Is Required *
Presented by Mathworks, this session introduces tools and techniques for distributing code and writing parallel algorithms in MATLAB. The session shows how to use Parallel Computing Toolbox to speed up existing code and scale up across multiple computers using MATLAB Distributed Computing Server (MDCS). Attendees who are working with long-running simulations, or large data sets, will benefit from the hands-on demonstrations and exercises in the course.
Please bring a laptop for hands-on exercises. An FAS RC account is required for the DCS portion of the session. If you are not eligible for a FASRC account, you can follow along with another class participant.
The class portion of the session will run from 9:30 AM - 12:30 PM. An additional breakout interactive session will run from 1:30 PM -4:00 PM for those with additional questions or wishing for more hands-on time.
2 signed up so far. Limit: 35.
Office Hours Wed. 12-3PM
Research Computing holds office hours Wednesdays, 12PM-3PM, at 38 Oxford Street, room 206. Research Computing staff is on hand to answer questions and troubleshoot problems. Be sure to check out our Office Hours special topics series!
HCSPH Office Hours (Kresge 205)
Office hours for HCSPH are held jointly between FAS Research Computing and the HCSPH BioInfo Core.
Additionally, we often offer training sessions (see Events calendar or the link below) at the beginning of every other session.
More information for HCSPH users can be found on the HCSPH Research Computing page.
Choosing Resources Wisely – Kresge 205
Now that you know how to submit a basic job script to SLURM, knowing the appropriate resource needs (queues, number of cores, memory, storage, time, etc) for your jobs can be puzzling, but it can be a relatively straightforward task. In this session, we will provide you the tools needed to make the most efficient use of RC cluster resources, which will ultimately lead to more research throughput.
Choosing Resources Wisely – 38 Oxford 206
Now that you know how to submit a basic job script to SLURM, knowing the appropriate resource needs (queues, number of cores, memory, storage, time, etc) for your jobs can be puzzling, but it can be a relatively straightforward task. In this session, we will provide you the tools needed to make the most efficient use of RC cluster resources, which will ultimately lead to more research throughput.
Office Hours Wed. 12-3PM
Research Computing holds office hours Wednesdays, 12PM-3PM, at 38 Oxford Street, room 206. Research Computing staff is on hand to answer questions and troubleshoot problems. Be sure to check out our Office Hours special topics series!
HCSPH Office Hours (Kresge 205)
Office hours for HCSPH are held jointly between FAS Research Computing and the HCSPH BioInfo Core.
Additionally, we often offer training sessions (see Events calendar or the link below) at the beginning of every other session.
More information for HCSPH users can be found on the HCSPH Research Computing page.
Monthly Maintenance, Nov. 6, 2017 7am-11am
Monthly maintenance will occur on Monday, November 6th from 7am to 11am.
- Login and NX node reboots will be rebooted.
- Additional details to follow.